Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4232 111 4e-19 seq253 109 1e-18 seq5784 107 5e-18 seq2842 107 5e-18 >seq4232 Length=1601 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || || || | ||||| ||| ||| ||||| | || Sbjct 70 AAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAAC 129 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || |||||||| |||||| ||| | || ||||| Sbjct 130 GTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAACGTCTCATCTTT 189 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | ||||| || | |||||| |||| ||||| |||| ||||| ||| Sbjct 190 GCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAAATCCAAAAAGAATCT 249 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 250 ACTCTTCAC 258 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || || || | ||||| ||| ||| ||||| | || Sbjct 298 AAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAAC 357 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || |||||||| || ||| ||| | || ||||| Sbjct 358 GTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTT 417 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | ||||| || | |||||| |||| |||||| |||| ||||| ||| Sbjct 418 GCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAACATCCAAAAAGAATCT 477 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 478 ACTCTTCAC 486 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || || || | ||||| ||| ||| ||||| | || Sbjct 526 AAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAAC 585 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || |||||||| || ||| ||| | || ||||| Sbjct 586 GTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTT 645 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | ||||| || | |||||| | ||||||||| |||| ||||| ||| Sbjct 646 GCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAACATCCAAAAAGAATCT 705 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 706 ACTCTTCA 713 >seq253 Length=26518 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||| || || | || || ||| || ||| Sbjct 7615 CAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCCGAC 7674 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| || || |||||||| ||||| || ||||||||| || || ||| Sbjct 7675 TCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAA 7734 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| ||||| || ||||| ||||||||||| | || | |||| || ||| || Sbjct 7735 AGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAACATC 7794 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| || ||| | || | ||||| || Sbjct 7795 CAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCG 7832 >seq5784 Length=6787 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || || ||||| ||||| || || | ||||| ||| |||||| Sbjct 739 CAGAT-TTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCTGA 681 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | |||| || || ||||| |||||||| || ||||||||| || || || Sbjct 680 TTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCA 621 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || ||||| ||||| | |||||||| | || || |||| |||||| | Sbjct 620 ACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAACAT 561 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||| |||||||||||| | ||| Sbjct 560 TCAAAAAGAATCTACTCTTCACTTGGTT 533 >seq2842 Length=19016 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || || ||||| ||||| || || | ||||| ||| |||||| Sbjct 740 CAGAT-TTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCTGA 682 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | |||| || || ||||| |||||||| || ||||||||| || || || Sbjct 681 TTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCA 622 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || ||||| ||||| | |||||||| | || || |||| |||||| | Sbjct 621 ACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAACAT 562 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||| |||||||||||| | ||| Sbjct 561 TCAAAAAGAATCTACTCTTCACTTGGTT 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181727873061177