Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq253 113 4e-20 seq23 113 4e-20 seq5784 107 2e-18 seq2842 107 2e-18 seq4232 91.5 1e-13 >seq253 Length=26518 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| |||||||| ||| | || || |||| |||||| || Sbjct 7611 CATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC 7670 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | ||||| | || |||||||| || ||||| || || || || || ||||| Sbjct 7671 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 7730 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| || || || ||| | ||||||| | | || ||| || || Sbjct 7731 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAA 7790 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || ||||| ||||| ||| | || || || ||||| Sbjct 7791 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 7827 >seq23 Length=21893 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 136642 GTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAA 136701 ||||||| ||| | || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 3428 GTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTAGTACATGCCTGTCTTCAAT 3487 Query 136702 CCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACG 136761 || |||| |||| |||| || || || | | ||| || | || | | ||| | Sbjct 3488 CCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTGGTAATTTGGGTTGTCCATG 3547 Query 136762 AAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAAT 136821 || ||| || |||||||| ||||||||||||| |||||||||||| | | | || || Sbjct 3548 TGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCGGTCTGCAG-AAAGATCTAT 3606 Query 136822 AGTA-CTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAG 136859 || |||||||||||||| || | ||||| |||| Sbjct 3607 GATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAGAG 3645 >seq5784 Length=6787 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| || | || || ||| | || || ||||||| ||| | Sbjct 742 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 683 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||||||| | || |||||||||||| ||||| || || || || || |||||| Sbjct 682 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 623 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | ||| || ||||| ||||||| | | | ||| ||||| Sbjct 622 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 563 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| || |||| || || Sbjct 562 ATTCAAAAAGAATCTACTCTTCACTTGGT 534 >seq2842 Length=19016 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| || | || || ||| | || || ||||||| ||| | Sbjct 743 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 684 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||||||| | || |||||||||||| ||||| || || || || || |||||| Sbjct 683 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 624 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | ||| || ||||| ||||||| | | | ||| ||||| Sbjct 623 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 564 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| || |||| || || Sbjct 563 ATTCAAAAAGAATCTACTCTTCACTTGGT 535 >seq4232 Length=1601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || |||| || || | || || | ||||||||| | | Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || || ||| || || || || || || || || ||| Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | | |||||||||||| ||||| | | | | | |||||||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||||||||| || ||||||| ||| Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGTG 720 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || |||| || || | || || | ||||||||| | | Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || || ||| || || || || || || || || ||| Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | | |||||||||||| ||||| | | | | | ||| ||||| Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||||||||| || |||| || ||| Sbjct 235 ATCCAAAAAGAATCTACTCTTCACTTGGTG 264 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || |||| || || | || || | ||||||||| | | Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || || ||| || || || || || || || || ||| Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | | |||||||||||| ||||| | | | | | ||| ||||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||||||||| || |||| || ||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTG 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445060255695840