Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4232 158 1e-33 seq5784 145 8e-30 seq2842 145 8e-30 seq253 131 2e-25 seq2055 113 5e-20 >seq4232 Length=1601 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | ||| | ||| || || ||||| ||||| |||||||||||| Sbjct 509 CCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGAC 450 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || || |||||||| ||||| || | ||| ||||| || || || Sbjct 449 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 390 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| || || ||||| ||| | |||||||| ||||| || Sbjct 389 ATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACT 330 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || |||| ||| |||||||| |||||||| Sbjct 329 TCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 >seq5784 Length=6787 Score = 145 bits (160), Expect = 8e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| |||||||||||||||||| | |||| | || || || || Sbjct 539 GTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTG 598 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||||||||| || |||||||| || || || ||||| || ||||||||||| Sbjct 599 CTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTT 658 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| || || | | || || ||||| || ||||| || ||||||||||| || Sbjct 659 TTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGT 718 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | ||| || || ||||| |||||| Sbjct 719 AAGAGTCTTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 145 bits (160), Expect = 8e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| |||||||||||||||||| | |||| | || || || || Sbjct 540 GTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTG 599 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||||||||| || |||||||| || || || ||||| || ||||||||||| Sbjct 600 CTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTT 659 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| || || | | || || ||||| || ||||| || ||||||||||| || Sbjct 660 TTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGT 719 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | ||| || || ||||| |||||| Sbjct 720 AAGAGTCTTTACAAAAATCTGCATT 744 >seq253 Length=26518 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||| | || | ||| || || ||||||||||| ||||| |||||| Sbjct 7838 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAG 7779 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | || || ||||| ||||| | | |||||||| || || Sbjct 7778 AGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 7719 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||||||||||| || | | |||||| ||||| || Sbjct 7718 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 7659 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 7658 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 >seq2055 Length=5446 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | ||| ||||| || || || || ||||| || |||||||||||||| || Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | |||||||| ||||| || || || || ||||| || || || | |||| Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 134697 TTAACGAAAATTTGCATTTTGT 134718 || || |||||||||||||||| Sbjct 121 TTGACAAAAATTTGCATTTTGT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505359629625240