Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2855 262 5e-65 seq23 181 1e-40 >seq2855 Length=12074 Score = 262 bits (290), Expect = 5e-65 Identities = 598/893 (67%), Gaps = 10/893 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||||||||| || | ||||| || || || || ||||| ||||||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||||||||| || || || || | | ||| | ||| || || | ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACAAAAG 5039 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| | || ||||||||||| ||||| ||| | | | |||||||||||| || Sbjct 5040 CAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAAG 5099 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || |||| | || |||| || |||| ||| ||| ||||| || | | || Sbjct 5100 AGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAAT 5159 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | || || ||| ||| | | | | ||| |||| || |||| |||| Sbjct 5160 GGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGAA 5219 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 || || || || |||||||||| || | |||||| || || || || || ||||| Sbjct 5220 ATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCAT 5279 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || ||||||||||||||||| || ||||| || || || ||| ||||| |||||||| Sbjct 5280 AAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTTC 5339 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCACTT 39801 ||| | ||| ||| | | ||| || || | | || || | || ||||| | Sbjct 5340 TACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATTC 5399 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| | ||| || ||||||| || || || ||| || ||||| | | | Sbjct 5400 AAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGAA 5459 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | | ||||| || ||||||| | ||||| || || | || | |||||||| || Sbjct 5460 GTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGTG 5519 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||| ||||||||| || || || ||||||||||| | ||||| | ||||| || || Sbjct 5520 GATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTTC 5579 Query 39982 TGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | || ||| || || ||| ||||| || || || ||||||||||| || || || | Sbjct 5580 GGTACCAAA-GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAAGG 5638 Query 40041 CCAATACATGTTTAATAAAATATTTTTC---ATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | | | | ||| || ||||| |||| ||| | | | || | ||||| |||| Sbjct 5639 CGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGT-GTTGA 5697 Query 40098 -TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | || | || | ||| ||||||||| | ||||| || || || || ||||||||| Sbjct 5698 GTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTAC 5757 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 || | |||||| || | ||| |||||| || | ||||| ||||||||||| Sbjct 5758 ATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATT 5810 >seq23 Length=21893 Score = 181 bits (200), Expect = 1e-40 Identities = 576/879 (66%), Gaps = 17/879 (2%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || || ||||| || | ||| || || || || ||||| || ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 ||||| ||||| ||||| || || | |||||||||||||| ||||| || || | ||| Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGT--CTTGTAACGC-TTCTCT-TTTTCATA 69500 | | ||| | | ||| | || || | | | || | ||| | ||||| || Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATG-CGTTTGCGAGGAAGACCTTCAGTGTTTTCGTA 4692 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 | | || ||| ||||| | || |||||||| ||| | | |||||| ||||| Sbjct 4693 CTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTCATG 4752 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 || || | |||||||| | | | ||| ||| || ||| || || || ||||| Sbjct 4753 AGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAAT 4812 Query 69621 CCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 |||||| || || || | || | || | ||||||||| || || ||||||| | | Sbjct 4813 CCAAAG-GCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCTCA 4871 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 | | ||| || | ||| ||||||||||||||||| ||||| || || | | | || | Sbjct 4872 AGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCCTG 4931 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 | ||||| || || || ||||| | ||||| || || | || | ||| ||||| | Sbjct 4932 GACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCATTG 4991 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATAT 69859 ||| || || || || |||| || ||||||| ||| || || ||||||| |||| Sbjct 4992 GAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGATAT 5051 Query 69860 TACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATG 69919 | || || || ||||| || || ||| || ||| |||||| | | | Sbjct 5052 TGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGATAG 5111 Query 69920 TGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATT 69978 | ||||| ||||| || || |||||| || ||||| ||| |||||| || || Sbjct 5112 TATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAG-AAACAG---GAGCTT 5167 Query 69979 ---TGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTT 70035 ||| | | ||||||| | || || | |||||||| || ||||| || | | Sbjct 5168 AGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCGT 5227 Query 70036 TCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTAT 70094 | || | || | ||| |||| || || |||| | ||| ||| ||| || || || Sbjct 5228 TGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCAC-CATGGATACCAAT 5286 Query 70095 CGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAG 70154 ||| ||||| | | | ||||||| ||| | ||||| || | ||| | || Sbjct 5287 ACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAGAAG 5346 Query 70155 GTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 ||| ||| |||| || ||||| || ||||| ||||| || Sbjct 5347 GTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68410 AGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGT 68469 || |||||||| || || |||| ||| |||| || || || ||||| || ||| Sbjct 3464 AGGTAGTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGT 3523 Query 68470 TTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCT 68529 || ||| |||| | | | || |||||||| | ||||| |||||||||||| ||||| Sbjct 3524 TTTTGGTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCT 3583 Query 68530 CCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAA 68589 || | ||||| | | | ||| ||| |||||| |||||| ||| ||| || | Sbjct 3584 CCGCGGTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAG 3643 Query 68590 ATCTGTTTGATATCATCTGG 68609 | ||||| | |||||||| Sbjct 3644 AGTTGTTTCAAGTCATCTGG 3663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686856105508680