Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2855 183 2e-41 >seq2855 Length=12074 Score = 183 bits (202), Expect = 2e-41 Identities = 580/885 (66%), Gaps = 23/885 (3%) Strand=Plus/Minus Query 43688 AATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAA 43747 ||||| ||||||||| | || ||||| ||| || || |||||||||||||||||| Sbjct 5810 AATCCAAATAGGTTTGTGCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAA 5751 Query 43748 AAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCAC 43805 ||||| | || || ||||| | |||||||| ||| || || | ||| | | ||| Sbjct 5750 AAAGCTGAAGCCAGTTTCTGGACTGTTGAAGAAGTCGATCTGTCTCATGACACTCAACAC 5691 Query 43806 ATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863 | ||| || ||| | || |||| |||| || | | || || || Sbjct 5690 -TGGGAAAACAAGCTAACTGATAACGAAAGGTATTTCATCAAAAACATCCTCGCCTTCTT 5632 Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA 43923 ||||| || || || || ||||| ||||| | || | |||| ||||| || Sbjct 5631 CGCTGCTAGTGATGGTATCGTCAACGAAAACCTTGTCGCTAACTTTGGTACCGAAGTCCA 5572 Query 43924 ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGA 43983 | | |||||||| || |||||||| || || ||||| || |||||||| || || Sbjct 5571 AATCCCAGAAGCCCGCTGTTTTTACGGTTTCCAAATAATGATTGAAAATATCCACAGCGA 5512 Query 43984 AATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG----GCACGAGAAGCATCGAT 44039 ||||||| | | || || || || |||||||||||| | | |||| | || | Sbjct 5511 AATGTACTCTATGCTTATTGACACATACATCAAAGATAATGTTGAAAGAGA--CTTC--T 5456 Query 44040 TGTTTAATGCGATAGAAA-CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 | | ||||| || ||| || ||||| || || | || || ||||||||||| || Sbjct 5455 TACTCAATGCCGTACAAAACATCCCCTGC-ATAAAGAAAAAGGCTAACTGGGCCCTTGAA 5397 Query 44099 TGGATAAAT---TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| || || | | ||||| ||| || | | || ||| || || ||| Sbjct 5396 TGGATTGATGACTCTAGAAAAAGCTTTGGTGAAAGATTGGCTGCTTTTTGTGTCGTAGAA 5337 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 ||||| ||||| || || || || ||||| || ||| | || || || || | ||| Sbjct 5336 GGCATATTCTTCAGTGGCTCCTTCGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTTATG 5277 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTT 44275 || || | || || ||||| || | || || | |||||||| | || |||||| Sbjct 5276 CCCGGTCTTACTTTCTCAAACGAACTTATCTGTAGAGATGAAGGTCTTCACACCGATTTC 5217 Query 44276 GCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGACAATTACAGA 44334 | ||| | || | ||| || | || || ||||| || | | || || || Sbjct 5216 GGCTGCCTATTGTTCAAATACCTCGTCAAC---AAACCTTC-TGAAGAAACGATATTAGC 5161 Query 44335 TATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAA 44394 ||||||| || || || | |||||||||||||| | || |||||||||| Sbjct 5160 CATTGTTGCTGACGCCGTTACCATAGAACAAGAATTCTTAACTGACTCATTACCTGTCTC 5101 Query 44395 TTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTT 44454 | | |||||||||||| | ||| ||| || ||||||| |||| || || || Sbjct 5100 TCTTATAGGAATGAATAGCAAGCTAATGTCCCAGTACATTGAATTTGTTGCTGACCGCTT 5041 Query 44455 ACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGA 44514 |||||| || || | | ||||| ||| || ||||| || ||||| ||||| Sbjct 5040 GCTTTTGTCTCTTGGCTTCTCCAAACATTATCACGTCACCAACCCATTCGATTTCATGGA 4981 Query 44515 AAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 | || || || ||||||| || ||||| |||||||| ||||| Sbjct 4980 TATGATCTCTATGCAAGGCAAGACTAACTTCTTTGAAAAGCGCGT 4936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426272402685