Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq23 150 2e-31 >seq23 Length=21893 Score = 150 bits (166), Expect = 2e-31 Identities = 626/975 (64%), Gaps = 36/975 (4%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| || || || | ||||| ||||| || ||||| |||||||| | Sbjct 4454 GGGAGGGCAATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAACG 4513 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| || |||| ||| || || ||||| || || | || | ||||||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 || ||||| || |||||||||||||| || || || || || |||| || | | ||| Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATG--GCGTTGGC----CCGTCCCTCCG---CC 111460 || | ||| | | ||||| || || ||||| || | || || | Sbjct 4634 GCGTACCAGA-----GTTGCTGG-GCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTT 4687 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 ||||||||| |||||| | || |||| |||||| |||| | ||||| || || Sbjct 4688 TCGTACTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCT 4747 Query 111521 TTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCT 111580 | | || ||||| | ||||| | || |||| ||| || |||||||||||| Sbjct 4748 TCATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCA 4807 Query 111581 GGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGT 111640 |||||||| ||| | || | || | ||| ||||| | ||| || || | Sbjct 4808 GGAATCCAAAGGCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTT 4867 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 | || | | || || | || || | |||||||| |||||||| | |||| | Sbjct 4868 CTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCG 4927 Query 111701 CC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 || | || | | || |||||| || || || || || | ||| ||||| | || Sbjct 4928 CCTGGACGTTTGTTG-CCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAG 4986 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 |||||||| || || | || ||| || || || ||| || | | || | Sbjct 4987 CATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCG 5046 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | || |||||| | || || || ||||| | || || |||| ||||||| | Sbjct 5047 GATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGA 5106 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG--TTGGCGATAAGGAAGCAACTG 111934 | ||| |||| ||||| | ||| ||||| | |||| ||| | || ||| ||| | Sbjct 5107 GATAGTATCATAAATACCTTCGATAGAGTCAT-CTTGCATTG----TTAGCAAGAAACAG 5161 Query 111935 GA---CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | ||| || | || |||| ||||| ||||| || | || ||| | || Sbjct 5162 GAGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAA 5221 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | | ||||||||| || ||| || | | | | || | | ||||| || ||||| Sbjct 5222 AAGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATA 5281 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGT 112111 || || ||| ||||||| | ||| || || |||| |||| | ||||| | | | Sbjct 5282 CCAATACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAA--CTT 5339 Query 112112 T--GAAGAT-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGC 112168 | |||| | || |||| || |||||||||| ||||||||| | ||||| | || || Sbjct 5340 TGAGAAGGTAAGATCTT-TCGAGGGTTTTGAAACCAAAGTAGTTATAATCAAAATCGCGG 5398 Query 112169 TTCGTATCAATATCG 112183 || ||||||| ||| Sbjct 5399 TTGTTATCAATCTCG 5413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627983822095200