Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq23 147 3e-30 >seq23 Length=21893 Score = 147 bits (162), Expect = 3e-30 Identities = 612/952 (64%), Gaps = 38/952 (4%) Strand=Plus/Plus Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 ||| ||||| || || || || || || |||| || ||||| |||||||| | Sbjct 4453 AGGGAGGGCAATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAAC 4512 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||||| ||||| | |||||| || ||||| || || | ||| | ||| || || || Sbjct 4513 GATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACC 4572 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 ||||||||| || ||||| ||||||||||| || || || || | ||||| | | || Sbjct 4573 GTTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGAT 4632 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCACAGTG--GCGTTGGC----TCGCCCCTC---TTC 118933 ||| | ||||| | ||||| ||||| ||||| || | || || | Sbjct 4633 AGCGTACCAGA-----GTTGCTGG-GCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTT 4686 Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 118993 ||||||||| |||||| | || |||| ||||||| | || | || || || || Sbjct 4687 TTCGTACTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGC 4746 Query 118994 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053 | || |||||||| | ||||| | || ||| ||| || |||||| ||||| Sbjct 4747 TTCATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTC 4806 Query 119054 TGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 || ||||| || |||| |||| | || || |||| |||||| | || ||||| Sbjct 4807 AGGAATCCAAAG-GCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTT 4865 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 | ||| | ||||| || | || || | ||||| ||||| || || | |||| | Sbjct 4866 TTCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGA-AG 4924 Query 119173 ACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 | ||| |||| || | || | || || | || || | ||| ||||| Sbjct 4925 GCGCCT--GGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTT 4982 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATT 119284 | |||||||||| ||| || | ||| || || || || || || ||| | | | Sbjct 4983 GGAGCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCC--AGT 5040 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | || || ||||||| | || || || || || | || || |||| || || Sbjct 5041 TGCGCGGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACA 5100 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 || | || | | | || || || ||||| |||||| | | ||| | || ||| | Sbjct 5101 CTGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTG---TTAGCAAGAA 5157 Query 119405 GCTCGACATT---TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 | || || ||||| | || |||| |||||| || || || | || || | Sbjct 5158 ACAGGAGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGT 5217 Query 119462 GAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521 || | | ||||||||| || ||| || | | | ||| | | ||||| || || Sbjct 5218 AAAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATG 5277 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581 ||||| || ||| ||||| | | |||||| ||| |||| || | ||||||| | Sbjct 5278 GATACCAATACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAAC 5337 Query 119582 CCTCTGGAGGTAA-CTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATC 119632 | | |||||| |||| || | ||| |||| |||||| ||| | |||| Sbjct 5338 TTTGAGAAGGTAAGATCTT-TCGAGGGTTTTGAAACCAAAGTAGTTATAATC 5388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618387758289720