Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 102 9e-17 seq2855 87.8 2e-12 >seq23 Length=21893 Score = 102 bits (112), Expect = 9e-17 Identities = 339/524 (65%), Gaps = 10/524 (2%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||| |||||| ||||||| ||| | || |||||||| || || ||| | || Sbjct 5313 CCTCAATACCTTCTCATGCGCGTCAGTATTGGTATCCATGGTGAAGATGTCC----AATC 5258 Query 19163 CGCGAG----ACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218 ||| | || ||| |||| ||| ||| || || || || || | || ||||| Sbjct 5257 CGCCATCAAAACTTACCACCTCATGTCCCAACGCTTTTTTACTCATGCCTCTCCTACCCT 5198 Query 19219 TTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGA 19278 ||||||| | || || || ||| ||| | ||||||| | | | ||| | || Sbjct 5197 TTTCAACTCTGGAACTAATCGCCCTCAGCTAAGCTCCTGTTTCTTGCTAACAATGCAAGA 5138 Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTC 19338 |||| || || || || || || || || |||| || | || ||||| | | Sbjct 5137 TGACTCTATCGAAGGTATTTATGATACTATCTCCCAGTGTGCTAAAATTTCCAAATCTGC 5078 Query 19339 CGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGAC 19398 || || ||||| || | | |||||||| | | ||| | || ||| || Sbjct 5077 TGGTGGAATCGGCCTCAGCATCCACAATATCCGCGCAACTGGCTCCTACATTGCTGGAAC 5018 Query 19399 GAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| || |||| ||||| |||||||||| || ||||||| || || | || Sbjct 5017 TAACGGTACCTCCAACGGAATCGTTCCAATGCTCCAAGTATTCAACACAACCGCTCGATA 4958 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 |||| | || || ||| |||||| ||| | |||||||| || || || |||||||| Sbjct 4957 CGTCGATCAAGGCGGCAACAAACGTCCAGGCGCCTTCGCCATTTATCTTGAACCATGGCA 4898 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 | ||| | | || || | | || | || || ||| | || || | ||| Sbjct 4897 TTCTGACATTTTTGAATTTTTAAACTTGAGAAAAAATCACGGTAAAGAAGAAAATCGCGC 4838 Query 19579 TCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATG 19621 || ||| | ||| |||||||| |||||||| ||||| |||||| Sbjct 4837 CCGTGACTTGTTCTACGGCCTT-TGGATTCCTGACCTTTTCATG 4795 >seq2855 Length=12074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| ||||| || |||||| |||||| ||| || || |||||||||||||||||||| Sbjct 5343 CGTAGAAGGCATATTCTTCAGTGGCTCCTTCGCCGCCATCTTCTGGCTCAAAAAGCGTGG 5284 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||| ||||| || || | |||||| ||||| || || Sbjct 5283 CCTTATGCCCGGTCTTACTTTCTCAAACGAACTTAT 5248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548482721291280