Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4232 147 2e-30 seq5784 141 1e-28 seq2842 141 1e-28 seq253 140 4e-28 seq23 140 4e-28 seq2055 114 1e-20 >seq4232 Length=1601 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || |||||||| ||||| ||||| || || || Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| || ||||| |||||||| ||||| || ||||||||| Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || ||||| || || | ||||| | | || || || Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 ||||||| ||||| ||||||||| | || | |||||| | ||||| ||| Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGGTCAA 741 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || |||||||| ||||| ||||| || || || Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| || ||||| |||||||| ||||| || ||||||||| Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || ||||| || || | ||||| | | ||||| || Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| |||||||| | || | ||||| | ||||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGG 509 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || |||||||| ||||| ||||| || || || Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| || ||||| |||||||| ||||| || || |||||| Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || ||||| || || | ||||| | | ||||| || Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| |||||||| | || | ||||| | ||||| Sbjct 235 ATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGG 281 >seq5784 Length=6787 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || ||||| ||||| ||||| || || || || || || || || || || Sbjct 746 TAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATC 687 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||| || | ||| | || |||||||| || ||||| |||||||||||||| Sbjct 686 TTCTGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGA 627 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || | |||||||| ||||||||||| || |||| || ||| || | ||||| Sbjct 626 TCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTA 567 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||| ||||| |||||||| | || | ||||| || ||||| Sbjct 566 CAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGG 516 >seq2842 Length=19016 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || ||||| ||||| ||||| || || || || || || || || || || Sbjct 747 TAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATC 688 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||| || | ||| | || |||||||| || ||||| |||||||||||||| Sbjct 687 TTCTGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGA 628 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || | |||||||| ||||||||||| || |||| || ||| || | ||||| Sbjct 627 TCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTA 568 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||| ||||| |||||||| | || | ||||| || ||||| Sbjct 567 CAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGG 517 >seq253 Length=26518 Score = 140 bits (154), Expect = 4e-28 Identities = 185/255 (73%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 27378 TaaaaaaaTGGCCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAA 27437 ||||||||| | | ||| || ||| ||||| ||||||||||| || | ||||| || Sbjct 7588 TAAAAAAAT---CTAATATAGTA-TATCATGCAGATCTTTGTCAAAACCTTAACCGGTAA 7643 Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497 |||||||| || ||||| || || || ||| | ||| | || || || || Sbjct 7644 AACTATTACCCTCGAGGTCGAATCCTCCGACTCCATCGAAAACGTCAAACAAAAGATCCA 7703 Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 || ||||| |||||||||||||| ||||| | || ||||| || ||||||||| | || Sbjct 7704 AGATAAGGAAGGAATTCCTCCAGATCAGCAAAGACTTATTTTCGCAGGTAAGCAATTGGA 7763 Query 27558 GGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 |||| |||||||| | |||||||| ||||||||||||| || || || | ||| | Sbjct 7764 AGATGGCCGTACCCTCTCCGACTATAACATCCAAAAGGAATCTACCCTCCACTTGGTCCT 7823 Query 27618 GCGTCTTCGCGGTGG 27632 | || || ||||| Sbjct 7824 AAGACTCCGTGGTGG 7838 >seq23 Length=21893 Score = 140 bits (154), Expect = 4e-28 Identities = 520/805 (65%), Gaps = 30/805 (4%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| |||||||| ||||| | || || |||||||| || ||||||| ||||| | Sbjct 4506 ACTCAACGATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAG 4565 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 | || |||| || ||||| |||||| |||||| || ||||| || |||| ||| || | Sbjct 4566 ATTTACCGTTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAAT 4625 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG--GAATTTGCCTTCGGC 81125 | ||| |||| ||| | | | || ||| ||||| ||| ||||| | Sbjct 4626 CTAAGATAGCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGA--CCTTCAGT 4683 Query 81126 CA---CATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | ||||| ||| |||| | |||||||| |||| || |||| || | | Sbjct 4684 GTTTTCGTACTTTAGGTAGAGCT-CATCGAACTTTTCACCCCAAACGTCAGCTAGACCAG 4742 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTT---CATGA 81238 | || | |||||| | | ||||||| |||| || | | | ||||| Sbjct 4743 GAGCTTCATGAGGGCAGAATAATGACCAGTCGC---CGTTTTCCAAAACGCGGCGCATGA 4799 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 || |||||| ||||| ||| || ||||| ||| ||| ||| || || | ||| | Sbjct 4800 AAAGGTCAGGAATCCAAAGGCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGT 4859 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 | || | ||| | | ||| || | ||||| | ||||||||| || ||||| | || Sbjct 4860 GATTTTTTCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGG 4919 Query 81359 CGATCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 ||| | || || |||| ||| || || | |||||| || || || | ||| | Sbjct 4920 CGAAGGCGCC--TG-GACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGA 4976 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 |||| | | ||| || | ||| || | || |||||| || || | || || | Sbjct 4977 ATACTTGGAGCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGC 5036 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | | ||||| | ||| ||| || ||||| ||||| | | || ||||| | || Sbjct 5037 CAGTTGCGCGGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAG 5096 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 ||||| || || || |||||||| || ||||| || | || ||| ||||||| Sbjct 5097 CACACTGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGA 5156 Query 81593 AAC---AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGT 81649 ||| ||||| | |||||||| || | || | ||||| || || || | || | Sbjct 5157 AACAGGAGCTT---AGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCAT 5213 Query 81650 GAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCAC 81709 || | ||| | || | ||||| |||| || |||| || || | | | ||| |||| Sbjct 5214 GAGTAAAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCAC 5273 Query 81710 CGTGAATACCGATAGCTACACGCAT 81734 | || ||||| ||| || ||||| Sbjct 5274 CATGGATACCAATACTGACGCGCAT 5298 >seq2055 Length=5446 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || ||||| |||||||| || || ||||||||||| || Sbjct 138 AATGCAAATTTTTGTCAAAACTCTTACAGGCAAGACCATCACCCTTGAGGTTGAATCTTC 79 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| |||||||| |||||||| ||||| || |||||||| Sbjct 78 CGACACTATTGACAACGTTAAGCAAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCA 19 Query 27525 GCAGCGTCTAATTTTTGC 27542 ||| ||||| || ||||| Sbjct 18 GCAACGTCTCATCTTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570266650063440