Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5784 109 4e-19 seq2842 109 4e-19 seq4232 96.9 2e-15 >seq5784 Length=6787 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || |||||| |||||||| || |||||||| || ||| || || | || || ||| Sbjct 746 TAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATC 687 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || | || | ||| || ||||||||||| || || ||||| |||| Sbjct 686 TTCTGATTCTATCGAGAAT--GTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCA 629 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || ||||||||||| || ||| | || || | |||| ||| ||||| Sbjct 628 GATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGAC 569 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||||| ||| | || |||||| | ||| | ||||| || Sbjct 568 TACAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGG 516 >seq2842 Length=19016 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || |||||| |||||||| || |||||||| || ||| || || | || || ||| Sbjct 747 TAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATC 688 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || | || | ||| || ||||||||||| || || ||||| |||| Sbjct 687 TTCTGATTCTATCGAGAAT--GTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCA 630 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || ||||||||||| || ||| | || || | |||| ||| ||||| Sbjct 629 GATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGAC 570 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||||| ||| | || |||||| | ||| | ||||| || Sbjct 569 TACAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGG 517 >seq4232 Length=1601 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||||| || || || ||||| |||| |||||| || Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| ||||| || || || ||||| ||||| | || || | Sbjct 571 GACACTATTGACAAC--GTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACC 628 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || |||||||| |||||| | || |||| || | ||||| ||||||| Sbjct 629 AGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACA 688 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||| ||| | |||||||| Sbjct 689 ACATCCAAAAAGAATCTACTCTTCATTTGGT 719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||||| || || || ||||| |||| |||||| || Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| ||||| || || || ||||| ||||| | || ||| | Sbjct 115 GACACTATTGACAAC--GTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACC 172 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || |||||||| |||||| | || |||| || | |||||||| |||| Sbjct 173 AGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACA 232 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | ||||||||||| ||| | || ||||| Sbjct 233 AAATCCAAAAAGAATCTACTCTTCACTTGGT 263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||||| || || || ||||| |||| |||||| || Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| ||||| || || || ||||| ||||| | || || | Sbjct 343 GACACTATTGACAAC--GTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACC 400 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || |||||||| |||||| | || |||| || | |||||||| |||| Sbjct 401 AGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACA 460 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||| ||| | || ||||| Sbjct 461 ACATCCAAAAAGAATCTACTCTTCACTTGGT 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355835783382999