Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq253 194 4e-44 seq5784 156 1e-32 seq2842 156 1e-32 seq4232 141 2e-28 seq2055 114 3e-20 >seq253 Length=26518 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||||||||| | ||| || || || || |||||||||||||| || | ||||| Sbjct 7833 ACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGT 7774 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| |||||||| ||||| | ||| || || ||||||| ||| Sbjct 7773 ACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCC 7714 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||||||||| ||||||||||||| ||| ||| ||| |||||||| Sbjct 7713 TTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAG 7654 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || ||||| | |||||| Sbjct 7653 GGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 >seq5784 Length=6787 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || |||||||| ||||| || || | | ||| | |||||| Sbjct 531 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 590 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || || || | |||||| || || ||||||| ||||||||| || Sbjct 591 TCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 650 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || |||||||| || || ||||| | ||||| ||| || ||||| || || || Sbjct 651 TGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTT 710 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || || || |||||||||||||| | ||||||| || Sbjct 711 TTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 746 >seq2842 Length=19016 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || |||||||| ||||| || || | | ||| | |||||| Sbjct 532 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 591 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || || || | |||||| || || ||||||| ||||||||| || Sbjct 592 TCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 651 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || |||||||| || || ||||| | ||||| ||| || ||||| || || || Sbjct 652 TGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTT 711 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || || || |||||||||||||| | ||||||| || Sbjct 712 TTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 747 >seq4232 Length=1601 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || |||||||||||||| ||||| | | || | || ||||| || || Sbjct 713 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTCAAGTTGT 654 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || ||||| ||||| || || | |||||||||||| || ||||| Sbjct 653 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTC 594 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || || ||||| || ||| || || || || || ||||| || || Sbjct 593 TGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTT 534 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | ||||| Sbjct 533 AGAGTCTTAACGAAGATTTGCAT 511 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || |||||||||||||| || || | | || | || ||| Sbjct 494 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCT 435 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || ||||| || ||||| ||||| || || | |||||||||||| Sbjct 434 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 375 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| || || ||||| || ||| || || || || || ||| Sbjct 374 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 315 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 314 TTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || ||||||||||| || || || | | || | || ||| Sbjct 266 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCT 207 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || ||||| || ||||| ||||| || || | |||||||||||| Sbjct 206 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 147 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| || || ||||| || ||| || || || || || ||| Sbjct 146 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 87 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 86 TTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 >seq2055 Length=5446 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || ||||| ||||| || || | |||||||||||| || || ||||| || Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || ||||| || ||||||||| || ||||| ||||| || || ||||| Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 211098 TTTACAAACACCTGCATTTTATG 211120 || ||||| | |||||||| || Sbjct 121 TTGACAAAAATTTGCATTTTGTG 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159060855516005