Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4232 93.3 4e-14 >seq4232 Length=1601 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || |||||||| || || ||||| | Sbjct 737 CCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGAC 678 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || |||| ||||| |||||||| ||||| || ||||| |||||||| |||||| Sbjct 677 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 618 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCA 39235 || || ||||| || ||||| |||| ||| | || || ||| || || | Sbjct 617 ATTCCT-TCCTTGTCTTGAATCTTCTGCTTGA-CGTTGTCAATAGTGTCGGAAGATTCGA 560 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | || || | || || || || || ||||| ||||||||||| Sbjct 559 CTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||||| || || || |||||||| || || || |||| Sbjct 281 CCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGAC 222 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || |||| ||||| |||||||| ||||| || ||||| |||||||| |||||| Sbjct 221 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGG 162 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCA 39235 || || ||||| || ||||| |||| ||| | || || ||| || || | Sbjct 161 ATTCCT-TCCTTGTCTTGAATCTTCTGCTTGA-CGTTGTCAATAGTGTCGGAAGATTCGA 104 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | || || | || || || || || ||||| ||||||||||| Sbjct 103 CTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||||| || || || |||||||| || || || |||| Sbjct 509 CCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGAC 450 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || |||| ||||| |||||||| ||||| || ||||| |||||||| |||||| Sbjct 449 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 390 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCA 39235 || || ||||| || ||||| |||| ||| | || || ||| || || | Sbjct 389 ATTCCT-TCCTTGTCTTGAATCTTCTGCTTGA-CGTTGTCAATAGTGTCGGAAGATTCGA 332 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | || || | || || || || || ||||| ||||||||||| Sbjct 331 CTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429513472271081