Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5784 136 3e-27 seq2842 136 3e-27 seq4232 129 4e-25 >seq5784 Length=6787 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 |||| |||||||||||| || || || || || || ||||| || || |||||||| || Sbjct 748 CTTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAA 689 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || | || || | || ||| ||||| ||||||||| || || ||||| | || || Sbjct 688 TCTTCTGATTCTATCGAGAATGTTAAA-CAAAAAATTCAAGATAAGGAAGGAATTCCTCC 630 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 |||||| || || || || |||||||| || ||||| ||||| | ||||| ||| ||| Sbjct 629 AGATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGA 570 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||||| |||||||| || || | || || ||| Sbjct 569 CTACAACATTCAAAAAGAATCTACTCTTCACTTGGTT 533 >seq2842 Length=19016 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 |||| |||||||||||| || || || || || || ||||| || || |||||||| || Sbjct 749 CTTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAA 690 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || | || || | || ||| ||||| ||||||||| || || ||||| | || || Sbjct 689 TCTTCTGATTCTATCGAGAATGTTAAA-CAAAAAATTCAAGATAAGGAAGGAATTCCTCC 631 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 |||||| || || || || |||||||| || ||||| ||||| | ||||| ||| ||| Sbjct 630 AGATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGA 571 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||||| |||||||| || || | || || ||| Sbjct 570 CTACAACATTCAAAAAGAATCTACTCTTCACTTGGTT 534 >seq4232 Length=1601 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || || || || || || || || || ||||| || || | Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||| ||||| ||||| | || ||||| || Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||||||||| ||||||| || ||||| ||||||||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| || || | ||||| || Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGT 719 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || || || || || || || || || ||||| || || | Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||| ||||| ||||| | || ||||| || Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||||||||| ||||||| || ||||| ||| |||||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 463 ATCCAAAAAGAATCTAC 479 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || || || || || || || || || ||||| || || | Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||| ||||| ||||| | || || || || Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||||||||| ||||||| || ||||| ||| ||||| Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 235 ATCCAAAAAGAATCTAC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337984318677596