Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2855 288 8e-73 >seq2855 Length=12074 Score = 288 bits (318), Expect = 8e-73 Identities = 578/853 (68%), Gaps = 13/853 (2%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| ||||||||| ||| || |||||||| ||||| ||||| ||||||| | Sbjct 4912 ACACCAGCTTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATA 4971 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || | ||||| ||||| || || || || ||| |||||||| | ||| Sbjct 4972 GAGATCATATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGA 5031 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 | | |||||| |||||||| |||||||| || |||||| ||| || | || || ||| Sbjct 5032 GACAAAAGCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATT 5091 Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487 || || | ||||||| | || || || || ||||||||||| || ||||| || Sbjct 5092 CCTATAAGAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCA 5151 Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA 4547 | | || || ||| | |||| ||| ||||| || || | |||| ||||||| Sbjct 5152 GCAACAATGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGG 5211 Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || | ||||| || | |||||| ||||| | || |||||||| || || || | Sbjct 5212 CAGCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGA 5271 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 |||||||| | || | |||||| ||||| || || ||||| || || ||| |||||| Sbjct 5272 CCGGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAAT 5331 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT---GTCT 4724 |||||||||||| | ||| || | |||| || | |||| | | ||| Sbjct 5332 ATGCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAA---AGCTTTTTCTAGAGTCA 5388 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||||| | ||||||||||| |||||||| | ||| || || | | || || Sbjct 5389 TCAATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCA 5448 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | ||| | |||||| |||| || || ||||| || || | ||| Sbjct 5449 TTGAGTAAGAAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTAC 5508 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||| || |||||||| || || || || |||||||| || | ||||||| Sbjct 5509 ATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGG 5568 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | ||| |||||| ||| ||| | | || | ||||||||| || ||||| ||||| || Sbjct 5569 ATTTGGACTTCGGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCA 5628 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCG---TCAGGCTTAAGT--TTTT 5019 || || || || | | | || || ||| |||| |||| ||| | |||| Sbjct 5629 GCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAG--TTAGCTTGTTTT 5686 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 |||||| | || | || | ||| ||||||||||||||||| || ||||| | Sbjct 5687 CCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAG 5746 Query 5080 CTTTTTTGTACAT 5092 ||||||||||||| Sbjct 5747 CTTTTTTGTACAT 5759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427017658958621