Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2855 282 6e-71 seq23 158 2e-33 >seq2855 Length=12074 Score = 282 bits (312), Expect = 6e-71 Identities = 609/897 (68%), Gaps = 18/897 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 |||||| || || | || || || || || || ||||| ||||||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| ||||| ||||| || | | |||| ||| || || | ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACAAAAG 5039 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || | || ||||| ||||| || || ||| | | | ||||||||||||||| Sbjct 5040 CAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAAG 5099 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || |||| | || || | || |||||||| || || || || || | | || Sbjct 5100 AGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAAT 5159 Query 48089 CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 | | || |||||| ||| ||| | | | | ||| |||| || || | || Sbjct 5160 GGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGAA 5219 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 ||| ||||||||||||||||||| || | |||||| || || || ||||||||||| Sbjct 5220 ATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCAT 5279 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 || ||||| ||||||||||| || || || ||||| || ||| |||||||||||||| Sbjct 5280 AAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTTC 5339 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-ATCCA-CCGT 48326 |||| | ||| || | | ||| || || | || ||| | | || ||| | || | Sbjct 5340 TACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTT-TTC-TAGAGTCATCAATCCAT 5397 Query 48327 T---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 | | ||||| | |||||| ||||||| || || || ||| || ||||| | | Sbjct 5398 TCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAG 5457 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 |||| | ||||| ||||||| | ||| || || || | | | ||||||||| | Sbjct 5458 AAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTG 5517 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || ||||||||||| || || || ||||||||||| | ||||||| ||| || || Sbjct 5518 TGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACT 5577 Query 48504 TCCGTACAAAATCGTTCAGC--CAA-ATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 || |||| ||| ||| ||| ||| || || || || || |||||||||||||| || Sbjct 5578 TCGGTACCAAA--GTT-AGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAG 5634 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCA 48617 || || | | | ||| || ||||| ||||||| ||| || || || ||||| Sbjct 5635 AAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGT-G 5693 Query 48618 TTGA-TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 |||| | || | || | ||| ||||||||| | ||||| || || || |||||||| Sbjct 5694 TTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTT 5753 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||||| | |||||| || ||| |||||||| | ||||| ||||||||||| Sbjct 5754 GTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATT 5810 >seq23 Length=21893 Score = 158 bits (174), Expect = 2e-33 Identities = 445/675 (66%), Gaps = 14/675 (2%) Strand=Plus/Plus Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || |||||||| ||| | | ||||| ||||| ||||| | ||||||||||| || Sbjct 4718 TCACCCCAAACGTCAGCTAGACCAGGAGCTTCATGAGGGCAGAATAATGACCAGTCGCCG 4777 Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCG 78052 | |||| ||| || ||| || || ||||| ||||| || || || || | || || Sbjct 4778 TTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATCCAAAG-GCCGTAGAACAAGTCACG 4836 Query 78053 GGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112 || | || |||||| || || ||| ||| | | | | ||| || | ||| ||||| Sbjct 4837 GGCGCGATTTTCTTCTTTACCGTGATTTTTTCTCAAGTTTAAAAATTCAAAAATGTCAGA 4896 Query 78113 ATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172 |||||||||||| ||||| || || | | || || ||||| || || || ||||| | Sbjct 4897 ATGCCATGGTTCAAGATAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGATCGAC 4956 Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATT 78232 |||| ||||| | || | ||| | |||||||| || ||||| || || || || Sbjct 4957 GTATCGAGCGGTTGTGTTGAATACTTGGAGCATTGGAACGATTCCGTTGGAGGTACCGTT 5016 Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCC 78292 ||||||| ||| || ||| ||||||| ||||| ||| | || ||||| || Sbjct 5017 AGTTCCAGCAATGTAGGAGCCAGTTGCGCGGATATTGTGGATGCTGAGGCCGATTCCACC 5076 Query 78293 TGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTC 78352 || || || ||| ||| || | | ||||| || ||||| || ||| ||| Sbjct 5077 AGCAGATTTGGAAATTTTAGCACACTGGGAGATAGTATCATAAATACCTTCGATAGAGTC 5136 Query 78353 ATCCATCA-TGTTAAGAAGAAAACAGCTAGACATT---TGATGATGAACAGTTCCTGCAT 78408 ||| || ||||| ||| |||||| || || ||| | || |||||| | | Sbjct 5137 ATCTTGCATTGTTAGCAAG-AAACAG---GAGCTTAGCTGAGGGCGATTAGTTCCAGAGT 5192 Query 78409 TAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 78468 | || | || ||||| ||||| ||||| | || || | || | ||| |||| | Sbjct 5193 TGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGA 5252 Query 78469 TAGCTGATTCTATGTCCCATTGATGAATTCC--TACCGCTACACGCATCAACATATGCTG 78526 | || |||| | || ||| || || ||| | || ||||| | | | || Sbjct 5253 TGGCGGATTGGACATCTTCACCATGGATACCAATACTG--ACGCGCATGAGAAGGTATTG 5310 Query 78527 AGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 78586 ||||||||||| | ||| || | ||| | | ||| ||| |||| | ||||| || Sbjct 5311 AGGTCTTTCAATGATTTTACCATCAACTTTGAGAAGGTAAGATCTTTCGAGGGTTTTGAA 5370 Query 78587 ACCAAAATAGTTGTA 78601 |||||| ||||| || Sbjct 5371 ACCAAAGTAGTTATA 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694615510219680