Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2855 257 2e-63 seq23 145 1e-29 >seq2855 Length=12074 Score = 257 bits (284), Expect = 2e-63 Identities = 598/894 (67%), Gaps = 12/894 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||||||||| || | || || || || || || ||||| ||||||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||| || || || || || | |||| ||| || || | ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACAAAAG 5039 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || | || ||||| ||||| || ||| ||| | | | |||||||||||| || Sbjct 5040 CAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAAG 5099 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 ||| |||| | || || | || |||||||| || || || || || | | || Sbjct 5100 AGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAAT 5159 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | || ||||| ||| ||| | | | | ||| |||| || || | || Sbjct 5160 GGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGAA 5219 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 ||| ||||| ||||||||||||| || | |||||| || || || || || ||||| Sbjct 5220 ATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCAT 5279 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||||||||||||||| || || || ||||| || ||| |||||||||||||| Sbjct 5280 AAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTTC 5339 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA---TTATGAATCCACCT 46814 ||| | || || | | ||| || || | || | | || |||||| Sbjct 5340 TACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATTC 5399 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||||| | |||||||||||||| || || || ||| || ||||| | | || Sbjct 5400 AAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGAA 5459 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 || | ||||| || ||||||| | ||||| || || | | | |||||||| || Sbjct 5460 GTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGTG 5519 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 || |||||||| || || || ||||||||||| | ||||| | || || || || Sbjct 5520 GATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTTC 5579 Query 46995 TGTACAAAATCGTT-CAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 |||| ||| ||| ||||| || || || || || |||||||||||||| || || Sbjct 5580 GGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAAG 5637 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGTCATTG 47109 || | | | ||| || ||||| |||| | ||| || || || ||||| ||| Sbjct 5638 GCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGT-GTTG 5696 Query 47110 A-TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 | | || | || | ||| ||||||||| | |||||||| || || |||||||| || Sbjct 5697 AGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTA 5756 Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| | |||||| || | ||| || || || | ||||| ||||||||||| Sbjct 5757 CATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATT 5810 >seq23 Length=21893 Score = 145 bits (160), Expect = 1e-29 Identities = 440/673 (65%), Gaps = 10/673 (1%) Strand=Plus/Plus Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || |||||||| ||| | | ||||||| ||||| || || | |||||||| || || Sbjct 4718 TCACCCCAAACGTCAGCTAGACCAGGAGCTTCATGAGGGCAGAATAATGACCAGTCGCCG 4777 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCG 76647 | |||| ||| || ||| || || ||||| ||||| || || || || | || || Sbjct 4778 TTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATCCAAAG-GCCGTAGAACAAGTCACG 4836 Query 76648 GGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGA 76707 || | | |||||| || || ||| ||| | | | || || || | ||| ||||| Sbjct 4837 GGCGCGATTTTCTTCTTTACCGTGATTTTTTCTCAAGTTTAAAAATTCAAAAATGTCAGA 4896 Query 76708 ATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTAT 76767 |||||||||||| ||||| || || | | || || ||||| || || || ||||| | Sbjct 4897 ATGCCATGGTTCAAGATAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGATCGAC 4956 Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827 |||| || || | || | ||| | |||||||| || ||||| || ||||| || Sbjct 4957 GTATCGAGCGGTTGTGTTGAATACTTGGAGCATTGGAACGATTCCGTTGGAGGTACCGTT 5016 Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCC 76887 ||||||| ||| || ||| ||| || ||||| || ||||| ||||| || Sbjct 5017 AGTTCCAGCAATGTAGGAGCCAGTTGCGCGGATATTGTGGATGCTGAGGCCGATTCCACC 5076 Query 76888 TGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATC 76947 || ||| || ||| |||||| | | || ||||| || || || ||| || Sbjct 5077 AGCAGATTTGGAAATTTTAGCACACTGGGAGATAGTATCATAAATACCTTCGATAGAGTC 5136 Query 76948 ATCCATCA-TGTTAAGAAGAAAACAGCTAGACATT---TGATGATGAACAGTTCCTGCAT 77003 ||| || ||||| ||| |||||| || || ||| | || |||||| | | Sbjct 5137 ATCTTGCATTGTTAGCAAG-AAACAG---GAGCTTAGCTGAGGGCGATTAGTTCCAGAGT 5192 Query 77004 TAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 77063 | || | |||||||| |||||||| || | || || | || | ||| |||| | Sbjct 5193 TGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGA 5252 Query 77064 TAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAG 77123 | | | || | ||| ||| || || | | ||| ||||| | | | |||| Sbjct 5253 TGGCGGATTGGACATCTTCACCATGGATACCAATACTGACGCGCATGAGAAGGTATTGAG 5312 Query 77124 GTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAAC 77183 ||| ||| | | ||| || | ||| | | ||| ||| |||| | ||||| |||| Sbjct 5313 GTCTTTCAATGATTTTACCATCAACTTTGAGAAGGTAAGATCTTTCGAGGGTTTTGAAAC 5372 Query 77184 CAAAATAGTTGTA 77196 |||| ||||| || Sbjct 5373 CAAAGTAGTTATA 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712879709019840