Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2855 129 6e-25 >seq2855 Length=12074 Score = 129 bits (142), Expect = 6e-25 Identities = 398/611 (65%), Gaps = 11/611 (2%) Strand=Plus/Plus Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 || || ||||||| || | ||||| || || |||||||| |||| || | ||| Sbjct 5197 TATTTGAACAATAGGCAGCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCG 5256 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 || || || || | || ||||| | || || ||||| | ||| || || || || || Sbjct 5257 TTTGAGAAAGTAAGACCGGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAG 5316 Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673 || || ||||| || || || || | ||| || | | | | |||||| || Sbjct 5317 GAGCCACTGAAGAATATGCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTT 5376 Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 || | ||| |||||||| | ||| |||||||| |||| || || Sbjct 5377 TTTCTAGAGTCATCAATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATG 5436 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTT-TTTCTTCATTATCTGTTATATATGTATCAAT 23792 ||| | || || | | | |||| | |||| |||||||| | || ||||| ||||| Sbjct 5437 TTTTGTACGGCATTGAGTA-AGAAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAAT 5495 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 || | | |||||||| || ||||||||||| || || || || |||||||| Sbjct 5496 AAGCATAGAGTACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACA 5555 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA---TTTTCGTTAAC 23909 | ||||| | | ||| || || || ||| ||||| | | |||||||| || Sbjct 5556 GCGGGCTTCTGGGATTTGGACTTCGGTACCAAAG---TTAGCGACAAGGTTTTCGTTGAC 5612 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATC 23966 ||||||||||||||||| ||||| || || | | ||| || |||| ||||| ||| Sbjct 5613 GATACCATCACTAGCAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATC 5672 Query 23967 AGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026 |||| |||| ||| | | | | || | || | ||| ||||| ||||| ||||| Sbjct 5673 AGTTAGCTTGTTTTCCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCA 5732 Query 24027 AAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATAT 24086 ||||| || || || |||||| |||| || || | || |||||| || | Sbjct 5733 GAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAG 5792 Query 24087 TACGAATCTAT 24097 || || |||| Sbjct 5793 CACAAACCTAT 5803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521447995351800