Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4232 168 2e-36 seq253 165 2e-35 seq5784 141 2e-28 seq2842 141 2e-28 seq2055 131 4e-25 >seq4232 Length=1601 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| ||||| || || || ||||| || || ||| || ||| Sbjct 58 CAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGAC 117 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || |||||||| ||||| ||||||||||| |||||||||||| Sbjct 118 ACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAA 177 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| || ||||| || | ||| | |||| || || || Sbjct 178 CGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAAATC 237 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 238 CAAAAAGAATCTACTCTTCA-CTTG 261 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| ||||| || || || ||||| || || ||| || ||| Sbjct 286 CAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGAC 345 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || |||||||| ||||| ||||||||||| || ||||||||| Sbjct 346 ACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 405 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| || ||||| || | ||| | |||| || ||| || Sbjct 406 CGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAACATC 465 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 466 CAAAAAGAATCTACTCTTCA-CTTG 489 Score = 168 bits (186), Expect = 2e-36 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| ||||| || || || ||||| || || ||| || ||| Sbjct 514 CAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGAC 573 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || |||||||| ||||| ||||||||||| || ||||||||| Sbjct 574 ACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 633 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| || ||||| || | ||| | | ||||| ||| || Sbjct 634 CGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAACATC 693 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || || ||| Sbjct 694 CAAAAAGAATCTACTCTTCAT 714 >seq253 Length=26518 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || || ||||| || ||||||||||| ||| ||| ||| Sbjct 7615 CAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCCGAC 7674 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||||||||||||||| || || || |||||||| ||||| || |||||| Sbjct 7675 TCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAA 7734 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| ||||| || || || | |||||||| | || || |||| |||||| || Sbjct 7735 AGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAACATC 7794 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| || || || | || | |||||| Sbjct 7795 CAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTC 7830 >seq5784 Length=6787 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||||| ||||| ||||| || |||||||| || ||| || || Sbjct 739 CAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCTGAT 680 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||||| || |||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 679 TCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCAA 620 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || |||||||| | || | |||| || ||| | Sbjct 619 CGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAACATT 560 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| || || || |||| || Sbjct 559 CAAAAAGAATCTACTCTTCA-CTTGGTT 533 >seq2842 Length=19016 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||||| ||||| ||||| || |||||||| || ||| || || Sbjct 740 CAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCTGAT 681 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||||| || |||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 680 TCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCAA 621 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || |||||||| | || | |||| || ||| | Sbjct 620 CGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAACATT 561 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| || || || |||| || Sbjct 560 CAAAAAGAATCTACTCTTCA-CTTGGTT 534 >seq2055 Length=5446 Score = 131 bits (144), Expect = 4e-25 Identities = 115/143 (80%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| || |||||||| ||||| || || |||||||| ||||| ||| Sbjct 140 AAAATGC---AAATTTTTGTCAAAACTCTTACAGGCAAGACCATCACCCTTGAGGTTGAA 84 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || ||||| || ||||| ||||| ||||| ||||||||||| || Sbjct 83 TCTTCCGACACTATTGACAACGTTAAGCAAAAAATTCAAGACAAGGAAGGAATCCCACCA 24 Query 178035 GACCAGCAACGACTTATCTTCGC 178057 ||||||||||| || ||||| || Sbjct 23 GACCAGCAACGTCTCATCTTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203636550239578