Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5042 190 2e-43 >seq5042 Length=7215 Score = 190 bits (210), Expect = 2e-43 Identities = 583/889 (66%), Gaps = 17/889 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || |||||||| ||||| ||||| |||||||| || | | ||| || | | Sbjct 5386 TTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATAT 5445 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||| ||||| || || ||||| | ||| ||| | || | | || || | || | Sbjct 5446 CCATGAAATCGAATGGGTTAGTGACGTGATAATGT-TTGCTGAAACCTAGAGACAAAAGT 5504 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | || || |||||||| ||||| || ||||||| | || ||| |||||||| || Sbjct 5505 AAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAGG 5564 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || || | | ||||| |||| |||||| || ||| || || || ||| Sbjct 5565 GAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGATG 5624 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 | | | |||||| || | | | | |||| ||| |||| ||| || | || Sbjct 5625 GCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCCAAAA 5684 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 ||| || || ||||||||||| | ||||||||||||||| ||||| | || ||||| Sbjct 5685 TCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGGCATG 5744 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 || || || || | |||||| || || ||||| || || ||||| || || ||| Sbjct 5745 AGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCCTTCA 5804 Query 16331 ACAGATGC-AAAAGCGATTAATCGTTCCGCGTACGTAGCATCT-TTA---TTACGAATCC 16385 || || | |||||| | || || ||| | ||| | | ||| | | ||||| Sbjct 5805 AC-GACACAAAAAGCAGCCAGTC-TTTCGC---CAAAGCTTTTGTTAGAGTCATCAATCC 5859 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 | | | |||| | || |||| || || || || ||| | ||| || | | Sbjct 5860 ACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGTA 5919 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 ||| |||| |||| | || || |||||||| || | ||||||||| Sbjct 5920 GGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGTACATTTCAC 5979 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 ||| ||||| || || || || || ||||| || || || || || | ||||| | Sbjct 5980 TGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGA 6039 Query 16566 CTTCCACGTAAAATCGTTCCG-CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAA 16624 ||| || | || | || | ||||| || || |||||||| || || ||||| || Sbjct 6040 CTT-CAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAG 6098 Query 16625 AACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCAATCT 16681 || || | |||| ||| || |||||| |||||| | || || | | | ||| | | Sbjct 6099 AAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGT 6158 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 | || | || | ||| |||||||| ||||| || || || | || ||||| Sbjct 6159 TGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTG 6218 Query 16742 TACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTAT 16790 ||||||| ||| || || | ||| ||| || || | |||| |||||| Sbjct 6219 TACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 6267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511364863122680