Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq5539 89.7 4e-13 seq7711 84.2 2e-11 seq6735 84.2 2e-11 seq1303 84.2 2e-11 >seq5539 Length=6842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || |||| |||||||| ||||| ||||| | || |||||| ||| | | || | Sbjct 1120 ATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAACGCTTGATTT 1061 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 | || || |||||||| |||||| | || || |||||||||| ||||| || |||| Sbjct 1060 TCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAACATTCAAAAAGAAT 1001 Query 29155 CTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| |||| | || |||| || || Sbjct 1000 CTACTCTTCACTTGGTTCTCCGTCTACGTGGTGG 967 >seq7711 Length=15848 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| || || || ||||| |||||| ||| ||| || | Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | || ||||| || ||||| ||||| | || |||||| Sbjct 10805 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 10746 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||||||||| || || || || ||| |||||||| || | || | |||| |||| Sbjct 10745 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCT--CCGACTACA 10688 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || ||||||||||| || ||| |||| || || | || || || Sbjct 10687 ACATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 10639 >seq6735 Length=1584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| || || || ||||| |||||| ||| ||| || | Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | || ||||| || ||||| ||||| | || |||||| Sbjct 1152 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1093 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||||||||| || || || || ||| |||||||| || | || | |||| |||| Sbjct 1092 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCT--CCGACTACA 1035 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || ||||||||||| || ||| |||| || || | || || || Sbjct 1034 ACATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 986 >seq1303 Length=22699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| || || || ||||| |||||| ||| ||| || | Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | || ||||| || ||||| ||||| | || |||||| Sbjct 4479 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 4538 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||||||||| || || || || ||| |||||||| || | || | |||| |||| Sbjct 4539 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCT--CCGACTACA 4596 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || ||||||||||| || ||| |||| || || | || || || Sbjct 4597 ACATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 4645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428295547546595