Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7711 95.1 1e-14 seq6735 95.1 1e-14 seq1303 95.1 1e-14 seq923 87.8 2e-12 >seq7711 Length=15848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || || |||| || | || || |||||||| ||||| ||||| | Sbjct 10639 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 10698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| || || || || |||||||||| ||||| || || Sbjct 10699 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 10758 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||||||||| || | ||| | || || || Sbjct 10759 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 10818 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || || |||||||| ||||||||||| || ||||| Sbjct 10819 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 10865 >seq6735 Length=1584 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || || |||| || | || || |||||||| ||||| ||||| | Sbjct 986 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1045 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| || || || || |||||||||| ||||| || || Sbjct 1046 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 1105 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||||||||| || | ||| | || || || Sbjct 1106 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 1165 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || || |||||||| ||||||||||| || ||||| Sbjct 1166 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 1212 >seq1303 Length=22699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || || |||| || | || || |||||||| ||||| ||||| | Sbjct 4645 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 4586 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| || || || || |||||||||| ||||| || || Sbjct 4585 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 4526 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||||||||| || | ||| | || || || Sbjct 4525 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 4466 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || || |||||||| ||||||||||| || ||||| Sbjct 4465 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 4419 >seq923 Length=21762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | |||||| || ||||| ||||| ||||| | || || || |||| Sbjct 10603 AGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCGTCT 10662 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || |||| || | |||||||| || | ||||||||||| Sbjct 10663 TCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 10722 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || || | | | | || || | || ||| | ||| || ||| Sbjct 10723 TGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGATAGTC 10782 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || |||| |||||||| || |||||||| ||| Sbjct 10783 TTACCTGTTAGAGTTTTGACGAAAATTTGCATGTTG 10818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422219321445284