Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq7711 96.9 3e-15 seq6735 96.9 3e-15 seq1303 96.9 3e-15 seq5539 84.2 2e-11 >seq7711 Length=15848 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| || || || ||||| |||||| ||| ||| || | Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | |||| ||||| || ||||| ||||| | || |||||| Sbjct 10805 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 10746 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||| || || || || |||||||||||| || | || | |||| |||| Sbjct 10745 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCT--CCGACTACA 10688 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || |||||||||||||| || ||| |||| || || | || || || Sbjct 10687 ACATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 10639 >seq6735 Length=1584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| || || || ||||| |||||| ||| ||| || | Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | |||| ||||| || ||||| ||||| | || |||||| Sbjct 1152 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1093 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||| || || || || |||||||||||| || | || | |||| |||| Sbjct 1092 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCT--CCGACTACA 1035 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || |||||||||||||| || ||| |||| || || | || || || Sbjct 1034 ACATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 986 >seq1303 Length=22699 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| || || || ||||| |||||| ||| ||| || | Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | |||| ||||| || ||||| ||||| | || |||||| Sbjct 4479 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 4538 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||||||||||| || || || || |||||||||||| || | || | |||| |||| Sbjct 4539 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCT--CCGACTACA 4596 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || |||||||||||||| || ||| |||| || || | || || || Sbjct 4597 ACATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 4645 >seq5539 Length=6842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 || |||||||| ||||| ||||| | || |||||| ||| | | || || || Sbjct 1115 AAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAACGCTTGATTTTCGCC 1056 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || |||||| | |||||| | || || |||||||||| |||||||| ||||||||| Sbjct 1055 GGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAACATTCAAAAAGAATCTACT 996 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| |||| | || |||| || || Sbjct 995 CTTCACTTGGTTCTCCGTCTACGTGGTGG 967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410758003965086