Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5042 140 3e-28 seq923 122 9e-23 seq7711 105 7e-18 seq6735 105 7e-18 seq1303 105 7e-18 seq7572 100 3e-16 >seq5042 Length=7215 Score = 140 bits (154), Expect = 3e-28 Identities = 404/611 (66%), Gaps = 27/611 (4%) Strand=Plus/Minus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 ||||| | ||||| ||| ||| | || || |||| ||||||||||| || || || Sbjct 6262 TTCGTCCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAAAAAGCTGAAGCC 6203 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGC----G 116721 ||||||||||| || || || || ||||| | ||||| ||||||| | Sbjct 6202 AGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAACACTGGGAAAATAAG 6143 Query 116722 CTTGAAC-GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCG 116780 || ||| || ||||| | |||| |||||| || | || ||||| ||||| ||||||| Sbjct 6142 CT--AACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTTCTTCGCTGCCAGCG 6085 Query 116781 ACGGCATCGTCAACGAGAATCTGGTCG--AGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 | || ||||||||||| || || |||| | | ||| | | | || | || | | || Sbjct 6084 ATGGTATCGTCAACGAAAACCTCGTCGCCAAC-TTTGGAACTGAAG-TCCAAATCCCTGA 6027 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 || || || || || || || || || || || ||| | ||| |||||||| || Sbjct 6026 AGCCCGCTGTTTTTATGGTTTCCAAATTATGATTGAAAACATCCACAGTGAAATGTACTC 5967 Query 116899 GACCCTCATCGACACGTACGTGC--GCT--CTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | || || || || ||| | | | | | | | |||| ||| | | |||| Sbjct 5966 CATGCTTATTGATACTTACATCAAAGATAACGTTGAAAGAGACT-TCC---TACTCAACG 5911 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 || | | | || || ||| | || | ||||| | ||||| || ||||| | | Sbjct 5910 CCGTTCAAAACATCCCCTGCATTAAGAAAAAGGCTAACTGGGCTCTTGAGTGGATTGATG 5851 Query 117015 GC----AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | | | || || ||||| | |||| || || | ||| || ||| || Sbjct 5850 ACTCTAACAAAAGC----TTTGGCGAAAGACTGGCTGCTTTTTGTGTCGTTGAAGGCATC 5795 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| ||| ||| |||||||| || |||||||| || || |||||||||||||| Sbjct 5794 TTCTTCAGTGGCTCTTTTGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTCATGCCCGGT 5735 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || |||||| |||||| || |||| || ||||| ||||| || ||| |||| ||| Sbjct 5734 CTTACTTTCTCCAACGAACTTATCTGTAGAGACGAAGGTCTTCACACCGATTTTGGCTGC 5675 Query 117191 TTGCTGTTCAA 117201 | ||||||| Sbjct 5674 CTATTGTTCAA 5664 >seq923 Length=21762 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || || || || |||||| | || |||||| | | Sbjct 10586 ATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10527 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | ||||||| ||||| || || ||||| | ||||| Sbjct 10526 GACACAATTGACAACG-TCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCA 10468 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || |||||||| || |||| ||||| | |||||||| Sbjct 10467 GCAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAA 10408 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || || |||| || || Sbjct 10407 CATCCAAAAAGAATCCACTCTCCA 10384 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| || || || || || |||||| | || |||||| | Sbjct 10817 AACATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCT 10758 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| | ||||| | ||||| || || ||||| | || Sbjct 10757 TCAGACACAATTGACAACG-TCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGA 10699 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| ||||| | ||| || |||||||| || |||| ||||| | ||||| Sbjct 10698 CCAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTA 10639 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || || |||| || || Sbjct 10638 CAACATCCAAAAAGAATCCACTCTCCA 10612 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || ||||||||| | || |||||| | | Sbjct 10358 ATGCAAATTTTCGTCAAAACTCTGACAGGTAAGACCATCACCCTTGAAGTCGAATCTTCG 10299 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | ||||| | ||||| || || ||||| | ||||| Sbjct 10298 GACACAATTGACAACG-TCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 10240 Query 40809 GCAACGACTCAT 40820 |||||| ||||| Sbjct 10239 GCAACGCCTCAT 10228 >seq7711 Length=15848 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || ||||| || ||| |||| |||||| || || Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||||| |||| |||| || | || || || || || || | || || Sbjct 10805 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 10747 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| || | ||| || || || |||| || | ||||||||| ||||||||| Sbjct 10746 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 10687 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 10686 CATCCAAAAGGA 10675 >seq6735 Length=1584 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || ||||| || ||| |||| |||||| || || Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||||| |||| |||| || | || || || || || || | || || Sbjct 1152 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1094 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| || | ||| || || || |||| || | ||||||||| ||||||||| Sbjct 1093 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 1034 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 1033 CATCCAAAAGGA 1022 >seq1303 Length=22699 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || ||||| || ||| |||| |||||| || || Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||||| |||| |||| || | || || || || || || | || || Sbjct 4479 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 4537 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| || | ||| || || || |||| || | ||||||||| ||||||||| Sbjct 4538 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAA 4597 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 4598 CATCCAAAAGGA 4609 >seq7572 Length=6253 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 ||||| | ||||| ||| ||| | || || |||| ||||||||||| || || || Sbjct 275 TTCGTCCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAAAAAGCTGAAGCC 216 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGC----G 116721 ||||||||||| || || || || ||||| | ||||| ||||||| | Sbjct 215 AGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAACACTGGGAAAATAAG 156 Query 116722 CTTGAAC-GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCG 116780 || ||| || ||||| | |||| |||||| || | || ||||| ||||| ||||||| Sbjct 155 CT--AACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTTCTTCGCTGCCAGCG 98 Query 116781 ACGGCATCGTCAACGAGAATCTGGTCG 116807 | || ||||||||||| || || |||| Sbjct 97 ATGGTATCGTCAACGAAAACCTCGTCG 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515169294580240