Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5539 104 3e-17 seq7711 95.1 2e-14 seq6735 95.1 2e-14 seq1303 95.1 2e-14 >seq5539 Length=6842 Score = 104 bits (114), Expect = 3e-17 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||||||||| || || ||||| || | || | || ||| ||| Sbjct 985 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCT 1044 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||| || || |||||||| | ||||||||| |||||||||||||| |||||||| Sbjct 1045 AGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1104 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || ||| ||| ||||||||| || || || |||||| Sbjct 1105 ATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTA 1164 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTTA 146281 ||||| | || || | || || |||||| || Sbjct 1165 CCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 1197 >seq7711 Length=15848 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||| ||||| || | |||||||| || || || || || || Sbjct 10639 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 10698 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| || || || ||||| | |||||||||||| |||||| Sbjct 10699 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 10758 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 10759 ATTCCTTCCTTATCTTG 10775 >seq6735 Length=1584 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||| ||||| || | |||||||| || || || || || || Sbjct 986 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 1045 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| || || || ||||| | |||||||||||| |||||| Sbjct 1046 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 1105 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1106 ATTCCTTCCTTATCTTG 1122 >seq1303 Length=22699 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||| ||||| || | |||||||| || || || || || || Sbjct 4645 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 4586 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| || || || ||||| | |||||||||||| |||||| Sbjct 4585 AGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 4526 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 4525 ATTCCTTCCTTATCTTG 4509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743454380174080