Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5042 217 1e-51 seq7572 109 5e-19 >seq5042 Length=7215 Score = 217 bits (240), Expect = 1e-51 Identities = 562/855 (66%), Gaps = 11/855 (1%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || || ||||| | ||||||||||||||| ||||| |||| | || || | Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATA 5444 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| ||||| || || || | ||| | ||| | | || | ||| | | Sbjct 5445 TCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACCTAGAGACAAAAGT 5504 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || | || || |||||||| |||||||| |||||| | | ||||||||||||| Sbjct 5505 AAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAGG 5564 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||||| | || || ||||| || | || ||| || |||| || ||| | || Sbjct 5565 GAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGATG 5624 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAATAA----GTGTTTAAACATTATACAAGC 16239 || || | | || | ||||| || | | || ||| |||| || || | Sbjct 5625 GCTAATATT----TTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCC 5680 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 |||||| || | |||||||| |||| || | ||||| || || |||||||| || Sbjct 5681 AAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGG 5740 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || || ||||| | ||| || || |||||||| || ||| ||||| || || Sbjct 5741 CATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCC 5800 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 |||||| | ||| ||| ||| || || || | || | || || ||||| Sbjct 5801 TTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGTCATCAATCCA 5860 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 | |||||| || || |||| |||| ||| ||||| | | || || | || Sbjct 5861 CTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGTAG 5920 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | | |||| | ||||| || |||||||| || || | |||||||| Sbjct 5921 GAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGTACATTTCACT 5980 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 || || || || || || || ||||||||||| || | ||||| | ||||| || Sbjct 5981 GTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGAC 6040 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 ||||| ||| | | | | ||||||||| || || |||||||| || || || || Sbjct 6041 TTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAA 6100 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG---TTTTAACCAGTCAGA 16716 || || |||| || ||||||| | |||||||||| | || ||| ||||| Sbjct 6101 GGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTG 6160 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 | || | ||| | |||||| ||||| || ||||| ||| || |||| ||||| || Sbjct 6161 AGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTA 6220 Query 16777 CATTTTCCATATGTC 16791 ||||| |||||| || Sbjct 6221 CATTTGCCATATTTC 6235 >seq7572 Length=6253 Score = 109 bits (120), Expect = 5e-19 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 16559 ATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCT 16618 || || ||||||||||| || | ||||| | ||||| ||||||| ||| | | Sbjct 13 ATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTTCCAAAGTTGGCG 72 Query 16619 GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATA 16678 | | ||||||||| || || |||||||| || || || || || || |||| || ||| Sbjct 73 ACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATA 132 Query 16679 AAAtttttttCGTTATCTGAAAG---TTTTAACCAGTCAGAAAAATCTTTTGATAAATCG 16735 |||| | |||||||||| | || ||| ||||| | || | ||| | |||| Sbjct 133 AAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGTCGTGTGACAGATCG 192 Query 16736 ACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 || ||||| || ||||| ||| || |||| ||||| ||||||| |||||| || Sbjct 193 ACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTC 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462467199931400