Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5042 205 9e-48 >seq5042 Length=7215 Score = 205 bits (226), Expect = 9e-48 Identities = 572/864 (66%), Gaps = 29/864 (3%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||| || || ||||| | ||||||||||| |||||||| |||| || || || | Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATA 5444 Query 13973 TCCATAAAATCAAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAATAG 14031 ||||| ||||| ||||| || | |||| | | | ||| ||||||| || || Sbjct 5445 TCCATGAAATCGAATGGGTTAG-TGACGTGATAATGTTTGCTGAAACCTAGAGACAAAAG 5503 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| | || |||| || || ||||| || |||||||| | | |||||| |||||||| Sbjct 5504 TAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAG 5563 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 ||||| | | | ||||| ||||||| ||| || | || ||||| || Sbjct 5564 GGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTC---AGCAAC 5620 Query 14152 AATCG-TAATA--ATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 14208 || | ||||| |||| | ||| || | | || | ||| || | || || | Sbjct 5621 GATGGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCC 5680 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 |||||| ||||| || || ||||||| ||||||||||| || || || | || || Sbjct 5681 AAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGG 5740 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 ||| | || || ||||| | ||| || || || || || || || ||||| || || Sbjct 5741 CATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCC 5800 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA------ 14382 ||||| || ||| || | || ||| ||||| || ||||||| || Sbjct 5801 TTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAA----GC--TTTTGTTAGAGTCATC 5854 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | |||||| | || ||||| ||||| | || ||| || || || Sbjct 5855 AATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTT 5914 Query 14443 AAATA--AATGTTCCTTC-TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 | || || || ||| | ||| | ||| ||||| ||||||||||| | | || Sbjct 5915 GAGTAGGAAGTCTCTTTCAACGTTA-TCTTTG--ATGTAAGTATCAATAAGCATGGAGTA 5971 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 ||||||| ||| |||||||| || || || |||||||||||||| | ||||| | Sbjct 5972 CATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGG 6031 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 ||| || || | ||| | || | | ||||| || || |||||||| || || Sbjct 6032 GATTTGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGC 6091 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG--TTTTTTC 14677 || || || || | ||||| || ||||| ||| || | || | || | ||||| Sbjct 6092 AGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTC 6151 Query 14678 CAATCGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 | | | | || | || ||||| ||||| ||||| ||||| ||||| || |||| Sbjct 6152 CCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGC 6211 Query 14737 TTTTTTATACATTACCCATATTTC 14760 |||||| |||||| ||||||||| Sbjct 6212 TTTTTTGTACATTTGCCATATTTC 6235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482298878799320