Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7711 118 8e-22 seq6735 118 8e-22 seq1303 118 8e-22 seq5539 98.7 8e-16 >seq7711 Length=15848 Score = 118 bits (130), Expect = 8e-22 Identities = 172/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 || |||||||| | || || || ||||| || |||| ||| || || ||||| ||||| Sbjct 10625 TTCTCTTTTTGGCA-CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGG 10683 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||||| | || || |||||||||||| || || || | ||||||||| Sbjct 10684 ATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 10743 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| ||||| | | | | | | Sbjct 10744 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 10803 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || || ||| || | ||| || |||| ||||| || ||||| ||||| || ||| Sbjct 10804 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 10863 Query 18324 AT 18325 || Sbjct 10864 AT 10865 >seq6735 Length=1584 Score = 118 bits (130), Expect = 8e-22 Identities = 172/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 || |||||||| | || || || ||||| || |||| ||| || || ||||| ||||| Sbjct 972 TTCTCTTTTTGGCA-CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGG 1030 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||||| | || || |||||||||||| || || || | ||||||||| Sbjct 1031 ATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 1090 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| ||||| | | | | | | Sbjct 1091 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 1150 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || || ||| || | ||| || |||| ||||| || ||||| ||||| || ||| Sbjct 1151 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 1210 Query 18324 AT 18325 || Sbjct 1211 AT 1212 >seq1303 Length=22699 Score = 118 bits (130), Expect = 8e-22 Identities = 172/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 || |||||||| | || || || ||||| || |||| ||| || || ||||| ||||| Sbjct 4659 TTCTCTTTTTGGCA-CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGG 4601 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||||| | || || |||||||||||| || || || | ||||||||| Sbjct 4600 ATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 4541 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| ||||| | | | | | | Sbjct 4540 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 4481 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || || ||| || | ||| || |||| ||||| || ||||| ||||| || ||| Sbjct 4480 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 4421 Query 18324 AT 18325 || Sbjct 4420 AT 4419 >seq5539 Length=6842 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| |||||| || |||||||||||||||||||| |||| | Sbjct 967 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 1026 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||| || || | || | | ||| ||||| || Sbjct 1027 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGA 1086 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| |||| ||| || || | ||| || ||| | || | Sbjct 1087 ATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACT 1146 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 |||| || ||| |||| || || | || ||||||||||| |||||| | ||| Sbjct 1147 TCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTAAAA 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308174397005