Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq923 147 2e-30 seq5539 104 2e-17 >seq923 Length=21762 Score = 147 bits (162), Expect = 2e-30 Identities = 179/243 (74%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 31180 AATTGAATCA-AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCG 31238 |||| |||| ||||||||||||||||| || ||||| ||||| || || |||||| | | Sbjct 10828 AATTCTATCACAACATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTG 10769 Query 31239 ACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG 31298 | || ||| | || |||| | || | ||||| |||| ||| ||||||||||| Sbjct 10768 AAGTCGAATCTTCAGACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAA 10709 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | || || |||||||| ||||| || ||||| || |||||| | |||||| ||| Sbjct 10708 TCCCACCAGACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTT 10649 Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCG 31418 || || || ||||| ||||||||||| ||||| || |||| || | || || |||| Sbjct 10648 TGTCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGCG 10589 Query 31419 GTA 31421 ||| Sbjct 10588 GTA 10586 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||||||||| || ||||| || || |||||| | || || ||| | || Sbjct 10586 ATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10527 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| ||| ||||||||||| | || || |||||| Sbjct 10526 GACACAATTGACAACGTCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 10467 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || |||||| | |||||| ||| | || || ||| Sbjct 10466 CAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAAC 10407 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||||| || |||| || | || || || |||| Sbjct 10406 ATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGTGGTA 10358 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||||||||| || || |||||| | || || ||| | || Sbjct 10358 ATGCAAATTTTCGTCAAAACTCTGACAGGTAAGACCATCACCCTTGAAGTCGAATCTTCG 10299 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| ||| ||||||||||| | || || |||||| Sbjct 10298 GACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 10239 Query 31313 CAGCGTCTAATATT 31326 || || || || || Sbjct 10238 CAACGCCTCATTTT 10225 >seq5539 Length=6842 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||||| ||||| ||||| || || | || || ||| | || Sbjct 1193 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTCT 1134 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||||| | ||| || |||||||| | || || || ||| Sbjct 1133 GATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1074 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||| || ||||| | ||||| || || |||||| ||| Sbjct 1073 CAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAAC 1014 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| |||||||| |||| || Sbjct 1013 ATTCAAAAAGAATCTACTCTTCACTTGGTTCT 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445723221952080