Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5042 116 7e-21 >seq5042 Length=7215 Score = 116 bits (128), Expect = 7e-21 Identities = 272/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 101828 AACGCTGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATG 101887 ||||| | ||| || ||||| ||| ||||| |||| | |||||| || | ||||| Sbjct 5914 AACGCCGTTCAAAACATCCCCTGCATTAAGAAAAAGGCTAACTGGGCTCTTGAGTGGATT 5855 Query 101888 CAAAGCAATAACGA----TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAAT 101943 | | |||| | ||||||| || | | | ||| ||| || |||||||| || Sbjct 5854 GATGACTCTAACAAAAGCTTTGGCGAAAG-ACTGGCTGCTTTTTGTGTCGTTGAAGGCAT 5796 Query 101944 CTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGG 102003 |||||| ||||| | || || |||| |||||| |||| || | || | |||| || Sbjct 5795 CTTCTTCAGTGGCTCTTTTGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTCATGCCCGG 5736 Query 102004 TCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063 ||| || | |||||| || | || | ||| |||||||||||||| ||| |||| || Sbjct 5735 TCTTACTTTCTCCAACGAACTTATCTGTAGAGACGAAGGTCTTCACACCGATTTTGGCTG 5676 Query 102064 CATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGT 102123 | | |||| ||| | | | | | || || ||||| || | | || || Sbjct 5675 CCTATTGTTCAAATA---CCTCATCAACAAGCCCTCTGAAGAAAAAATATTAGCCATCGT 5619 Query 102124 CACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGT 102183 |||| ||||| || ||||||||||| | || | || || ||||| || | Sbjct 5618 TGCTGAGGCCGTTACCATCGAACAAGAATTCTTAACTGACTCACTACCTGTCTCCCTAAT 5559 Query 102184 GGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGA 102231 |||||||| |||| || ||| |||||| || |||||||| || || Sbjct 5558 AGGAATGAATAGCAAATTAATGTCCCAGTATATCGAATTTGTTGCTGA 5511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989485750080295