Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5042 242 5e-59 seq2634 183 4e-41 seq7572 96.9 4e-15 >seq5042 Length=7215 Score = 242 bits (268), Expect = 5e-59 Identities = 615/925 (66%), Gaps = 14/925 (2%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| || |||||||| || | || || ||||| || ||||||||||| |||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || | ||||||||||| || || || || || | ||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 33398 CA-ATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | || || | || | || || || ||||| ||||| ||| | || | || Sbjct 5492 TAGAGACAAAAGTAAA-CGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTAT 5550 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||||||||| || || || || | |||| | ||||||||||| |||| || | Sbjct 5551 TCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGG 5610 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG-TGGATGTAATAAATGTTTAAAC 33575 | | | | || | | |||||||| || | | || | | | ||| ||| Sbjct 5611 CCTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATTTGAAC 5669 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 | | || | |||||| ||| ||||| |||||||||| || | |||||| || || Sbjct 5670 AATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAA 5729 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || |||||||| |||||||||||||| ||||| || |||| || || || || Sbjct 5730 GTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTG 5789 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---G 33752 |||||||| ||||| || || ||| ||| ||||| || ||| | | | | | Sbjct 5790 AAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAG 5849 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 |||| ||||||| ||||||| | ||||| || || | || || || ||| | | Sbjct 5850 TCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACG 5909 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || || | || ||| | ||||| ||||||| | |||||||| || | | Sbjct 5910 GCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAG 5969 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| || ||||||||||| || || || || || ||||| | || || Sbjct 5970 TACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCA 6029 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCATCAC 33990 | || || ||||| || | ||| ||| | | | ||||| || || || ||||| | Sbjct 6030 GGGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGC 6087 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA- 34049 |||| || || || || | | | || ||||||||| |||||| ||||| ||| Sbjct 6088 TGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTAT 6147 Query 34050 -TTCCAATCATTGA-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 |||| | |||| | || | || | ||| |||||||| || ||||| || || | Sbjct 6148 TTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTT 6207 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 | || ||||| ||||| | ||| || || || ||| |||||||| | || ||||||| Sbjct 6208 CAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 6267 Query 34168 TTGGATTTGGTGCAAGGATAGGTTC 34192 |||| || ||| ||| | ||| || Sbjct 6268 TTGGGTTGGGTTTAAGTAGAGGCTC 6292 >seq2634 Length=12318 Score = 183 bits (202), Expect = 4e-41 Identities = 572/877 (65%), Gaps = 13/877 (1%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || ||||||||||| || | || || ||||| | |||||||| ||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||| || || || || || ||| ||||||| |||||||| || || || |||| ||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 63117 GCTTTCCAGACGACTCGAGCCTTTAT----TATAGATTTGTATCTCCTTTCTCTTTCGTA 63172 || | ||||| | || | || | || | || | | | ||||||| Sbjct 8451 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGT-TTTCGTA 8393 Query 63173 TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATC 63232 | || | | ||||||| || |||||||| | | | | ||| ||||| Sbjct 8392 TTTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATG 8333 Query 63233 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63292 || || | || ||||| || |||| ||| || || ||| || || |||||||| Sbjct 8332 GGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAAT 8273 Query 63293 CCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63351 ||||||| | || || || || | | | || ||| || || || ||| ||| | | Sbjct 8272 CCAAAGACCGTAGAACAAG-TCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTA 8214 Query 63352 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63411 | | | || | | ||| || | |||||| ||||| | ||| ||||| | | || | Sbjct 8213 GGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTG 8154 Query 63412 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63471 | |||||||| || || || || | |||||||||||| | || | ||| | ||||| Sbjct 8153 GACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTG 8094 Query 63472 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT 63531 ||| ||| ||||| || |||||||||| |||| ||| || ||| | |||||||||| Sbjct 8093 GAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATAT 8034 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | || |||||| ||||| || || |||||||||| |||||| | | | Sbjct 8033 TGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAG 7974 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | ||||| || ||||| ||| ||||| ||| | || | || ||| | | | Sbjct 7973 TATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGCT 7914 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | ||||| ||||||| | || || | |||||||| || || ||||| | | | Sbjct 7913 GAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTG 7854 Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGC 63769 | | || | ||| || ||||| || | |||| ||| | ||| || || | ||| Sbjct 7853 ACATGAGGTGGTATGTAGTGATAGCGGATTGGATAT--CATCGCCATGGATACC-AATGC 7797 Query 63770 -GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGT 63828 ||| ||||| | | || || |||||||||| |||||| || | ||||| | || Sbjct 7796 TGACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACTTTCAGGAGGT 7737 Query 63829 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 | || |||| | ||||| || ||||| ||||| || Sbjct 7736 AAGACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATA 7700 >seq7572 Length=6253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 208/307 (68%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 |||||||| || || || || || ||||| | || || | || || ||||| || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 33951 CAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | ||| ||| | | | ||||| || || || ||||| ||||| || || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT--CCAATCATTGA-TAT 34065 | | || ||||||||| |||||| ||||| ||||| || | |||| | | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGT 178 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | | || | ||| |||||||| || ||||| || || || || ||||| ||||| | Sbjct 179 CGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTT 238 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGA 34185 ||| || || || ||| |||||||| | || ||||||||||| || ||| ||| | Sbjct 239 GCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGTTTAAGTA 298 Query 34186 TAGGTTC 34192 ||| || Sbjct 299 GAGGCTC 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629756594292720