Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5042 118 1e-21 seq2634 93.3 4e-14 seq7572 86.0 6e-12 >seq5042 Length=7215 Score = 118 bits (130), Expect = 1e-21 Identities = 490/763 (64%), Gaps = 20/763 (3%) Strand=Plus/Plus Query 11465 TCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACC 11524 || || || ||||| |||||||| |||||||| | |||||| ||||| || || Sbjct 5511 TCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAGGGAGACA 5570 Query 11525 GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTT 11584 || | | | || || || || | ||| || |||| || ||| | || | | Sbjct 5571 GGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGATGGCTAAT 5630 Query 11585 ATAACTTCCTTAGATGG-TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACA 11643 || ||| | ||| || | | || | | | ||| |||| || || ||||||| Sbjct 5631 ATTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATTTGAACAATAGGCAGCCAAAATCGGT 5689 Query 11644 ATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCC 11703 || | |||||||||||||| || ||||| || || || || | |||||||| | || Sbjct 5690 GTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGGCATGAGGCC 5749 Query 11704 TCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763 || ||||| | ||| || || || ||||| || ||| ||||| || || || || | Sbjct 5750 ACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCCTTCAACGAC 5809 Query 11764 TGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT------ATCCATTTTCT 11817 ||| || | | |||||| ||| | ||| ||| |||| ||||| | Sbjct 5810 ACAAAAAGCAGCCAGTCTTTCGCCAAAG--CTT-TTGTTAGAGTCATCAATCCACTCAAG 5866 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA--AATGC 11875 ||||| | ||| || || || | ||| || ||| | ||||| | || || | Sbjct 5867 AGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGTAGGAAGTC 5926 Query 11876 ATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | |||| | |||||| | | || ||||| || | | |||||||| || Sbjct 5927 --TCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGTACATTTCACTGTGG 5984 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 || ||||| || ||||| || ||||| ||||| || || || | || || || Sbjct 5985 ATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTC- 6043 Query 11996 ACATAAAATCTTTCCG-CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGC 12054 | | || || || | | || || || || |||||||| || | || || || || Sbjct 6044 AGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGC 6103 Query 12055 TAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT---CCCAATCATCTAA 12111 || || | || ||||| ||| |||||| | ||||| |||| |||| | | Sbjct 6104 GAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGT 6163 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 || | ||| | ||| ||||||||||||||||| ||||| || | | || ||| ||||| Sbjct 6164 GTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACAT 6223 Query 12172 TTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 || ||| || || || | || || ||||| | ||||| ||| Sbjct 6224 TTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTA 6266 >seq2634 Length=12318 Score = 93.3 bits (102), Expect = 4e-14 Identities = 246/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 || |||||| || || ||| ||||||| | ||| ||| || || || || || ||||| Sbjct 8242 ATTTTCTTCTTTACCGTGATTTTTTCTTAGGTTTAAAAATTCAAAAATGTCGGCATGCCA 8183 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 |||||| | ||||| | | || ||||| | ||| | || || || | | ||||| Sbjct 8182 TGGTTCAAGGTAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGGTCGACGTATCT 8123 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 | | || | || ||| | | ||| || || || || || || | || || | || Sbjct 8122 AGCGGTAGTGTTGAATACTTGGAGCATTGGAACAATTCCGTTCGAAGTACCATTGGTTCC 8063 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 || || |||| || | || || ||||| || | || |||||||| ||| Sbjct 8062 GGCGATGTAAGAGCCAGTTGCACGAATATTGTGGATACTTAGACCAATTCCACCAGCAGA 8003 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| || ||| ||||||||| | |||||| | |||||||| || |||||||| Sbjct 8002 TTTAGAGATTTTAGCGCATTGGGAGATAGTATCATAAATACCTTCGATGGAGTCATCCTG 7943 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATG 38431 |||| ||| | || || | | ||||| | || |||||| | ||| || | || Sbjct 7942 CATTGTTAGCAAGAAGCAGGAACTTAGCTGAGGACGAT-TAGTTCCAGAGTTGAAAAGTG 7884 Query 38432 TAGGAGATGCATG 38444 ||||||| ||||| Sbjct 7883 TAGGAGAGGCATG 7871 >seq7572 Length=6253 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || || || || |||||||| || | || || || || || || | || ||||| ||| Sbjct 79 TTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATAT 138 Query 12077 TTTTCGTCTTTAGTTAATTTAT---CCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 |||||| | ||||| |||| |||| | | || | ||| | ||| |||||| Sbjct 139 CTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCT 198 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 ||||||||||| ||||| || | | || ||| ||||||| ||| || || || | || Sbjct 199 TCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTT 258 Query 12194 ATAGGGAAAATAACGAACCTA 12214 || ||||| | ||||| ||| Sbjct 259 ATTGGGAAGAGGACGAATCTA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468479417516560