Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5042 251 9e-62 seq2634 185 1e-41 >seq5042 Length=7215 Score = 251 bits (278), Expect = 9e-62 Identities = 601/901 (67%), Gaps = 12/901 (1%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 |||||| || |||||||| || | || || ||||| || ||||||||||| |||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | || || | ||||||||||||||||| || | || | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 35974 CA-ATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032 | | || || | || | || || |||||||| ||||| ||| | || | || Sbjct 5492 TAGAGACAAAAGTAAA-CGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTAT 5550 Query 36033 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 36092 |||||||||| || || || || | |||| | ||||||||||| || | || | Sbjct 5551 TCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGG 5610 Query 36093 CGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 36152 | || | | || | || || | |||||||| || | | | | ||| |||| Sbjct 5611 CCTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACA 5670 Query 36153 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 36212 | || | |||||| ||| ||||| |||||||||| || | ||||||||| || | Sbjct 5671 ATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAG 5730 Query 36213 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 36272 | || |||||||| |||||||||||||| ||||| || |||| ||||| || ||| | Sbjct 5731 TAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGA 5790 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 36329 |||| || ||||| || | ||| ||| ||||| || ||| | | | | || Sbjct 5791 AGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGT 5850 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||| ||||||| ||||||| | ||||| || || | || || || | | | | Sbjct 5851 CATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGG 5910 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || | || ||| | ||||| ||||||| | || |||||||| | | | Sbjct 5911 CGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGT 5970 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 ||||||| || ||||||||||| ||||| || || || ||||| | || || | Sbjct 5971 ACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAG 6030 Query 36510 TAATCTGTACTTCTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACT 36567 || || ||||| || | ||| ||| | | | ||||| || || || || || || Sbjct 6031 GGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCT 6088 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA-- 36625 ||| || || || || | | | || ||||||||| ||||||| ||||| ||| Sbjct 6089 GGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATT 6148 Query 36626 TTCCAATCATTGA-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 |||| | |||| | || | || | ||| |||||||| || ||||| || || || Sbjct 6149 TTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTC 6208 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 || ||||| ||||| | ||| || || || ||| ||||| || | || |||||||| Sbjct 6209 AGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATT 6268 Query 36745 T 36745 | Sbjct 6269 T 6269 >seq2634 Length=12318 Score = 185 bits (204), Expect = 1e-41 Identities = 570/875 (65%), Gaps = 9/875 (1%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || ||||||||||| || | || || ||||| | |||||||| ||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 ||||| || || || || || ||| ||||||| |||||||| || || || |||| ||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 65910 GCTTTCCAGACGACTCGAGCCTTTATTA--TAGATTTGTATCTCTTTTCTCTTT-CGTAT 65966 || | ||||| | || | || | | | | ||| | ||| ||||| Sbjct 8451 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTAT 8392 Query 65967 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 66026 | || | | ||||||| || |||||||| | | | ||||| ||||| Sbjct 8391 TTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATGG 8332 Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || || | || ||||| || |||| ||| || || ||| || || ||||||||| Sbjct 8331 GGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATC 8272 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 |||||| | || || || | || | || ||| || || || ||| ||| | || Sbjct 8271 CAAAGACCGTAGAACAAGTCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTAGG 8212 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 | | || | | ||| || |||||| ||||| | ||| ||||| | | || || Sbjct 8211 TTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTGGA 8152 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 |||||||| || || || || | |||||||||||| | || | ||| | ||||||| Sbjct 8151 CGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTGGA 8092 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | ||| || || || ||||||||||| |||| ||| || ||| ||||||||||||| Sbjct 8091 ACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATATTG 8032 Query 66327 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 || |||||| ||||| || || |||||||||| |||||| | | ||| Sbjct 8031 TGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAGTA 7972 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 ||||| || || || || |||||| ||| | || | || ||| | | || Sbjct 7971 TCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGCTGA 7912 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 ||||| ||||||| | || || | |||||||| || || ||||| | | || Sbjct 7911 GGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTGAC 7852 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGC-G 66563 | || | ||| || ||||| || | |||| ||| | ||| || || | ||| | Sbjct 7851 ATGAGGTGGTATGTAGTGATAGCGGATTGGATAT--CATCGCCATGGATACC-AATGCTG 7795 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 66623 || ||||| | | || || |||||||||| || || || | ||||| | ||| Sbjct 7794 ACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACTTTCAGGAGGTAA 7735 Query 66624 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 || |||| | ||||| || ||||| ||||| || Sbjct 7734 GACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATA 7700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658109047737160