Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5042 277 3e-69 seq2634 194 2e-44 seq7572 89.7 7e-13 >seq5042 Length=7215 Score = 277 bits (306), Expect = 3e-69 Identities = 614/911 (67%), Gaps = 14/911 (2%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| || |||||||| || | || || ||||| || ||||||||||| |||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || | ||||||||||| || || || || || | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 49776 CA-ATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 | | || || | || | || || |||||||| ||||| ||| | || | || Sbjct 5492 TAGAGACAAAAGTAAA-CGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTAT 5550 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||||||||| || || || || | |||| | ||||||||||| |||| || | Sbjct 5551 TCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGG 5610 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAATGTTTAAAC 49953 | || | | || | | | |||||||| || | | || | | | ||| ||| Sbjct 5611 CCTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATTTGAAC 5669 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 | | || | |||||| ||| ||||| |||||||||| || ||||||||||| || Sbjct 5670 AATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAA 5729 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || || |||||||| |||||||||||||| ||||| || |||| ||||| || ||| Sbjct 5730 GTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTG 5789 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---G 50130 |||||||| ||||| || | ||| ||| | ||||| || ||| | || | | | Sbjct 5790 AAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAG 5849 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 |||| ||||||| ||||||| | ||||| || || | || || || ||| | | Sbjct 5850 TCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACG 5909 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || | || ||| | ||||| ||||||| | |||||||| || | | Sbjct 5910 GCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAG 5969 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| || ||||||||||| || || || || || ||||| | || || Sbjct 5970 TACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCA 6029 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTT--CAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | || || ||||| || | ||| ||| | | | ||||| || || || || || | Sbjct 6030 GGGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGC 6087 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA- 50427 |||| || || || || | | | || ||||||| | ||||||| ||||| ||| Sbjct 6088 TGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTAT 6147 Query 50428 -TTCCAATCATTGA-TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 |||| | |||| | || | || | ||| |||||||| || ||||| || || | Sbjct 6148 TTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTT 6207 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 | || ||||| ||||| | ||| || || || ||| |||||||| | || ||||||| Sbjct 6208 CAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 6267 Query 50546 TTGGATTTGGT 50556 |||| || ||| Sbjct 6268 TTGGGTTGGGT 6278 >seq2634 Length=12318 Score = 194 bits (214), Expect = 2e-44 Identities = 572/875 (65%), Gaps = 9/875 (1%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||||||||| ||||| | ||||| ||||| | |||||||| ||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||| || || || || || ||| | ||||| |||||||| || || || |||| ||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 79789 GCTTTCCAGACGACTCGAGCCTTTATTA--TAGACTTGTATCTCTTTTCTCTTT-CGTAT 79845 || | ||||| | || | || | | | | ||| | ||| ||||| Sbjct 8451 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTAT 8392 Query 79846 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA 79905 | | || | | ||||||| || |||||||| || ||| ||||| ||| | Sbjct 8391 TTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATGG 8332 Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 || || | || ||||| || || | ||| || || ||| || || ||||||||| Sbjct 8331 GGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATC 8272 Query 79966 CAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 |||||| | || || || || | || | || || || || || ||| ||| | || Sbjct 8271 CAAAGACCGTAGAACAAG-TCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTAG 8213 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 | | || | | ||| || | |||||| ||||| | ||| ||||| | | || || Sbjct 8212 GTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTGG 8153 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 |||||||| || || || || | |||||||||||| | || | ||| | |||||| Sbjct 8152 ACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTGG 8093 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 || ||| || || || ||||||||||| |||| ||| || ||| | ||||||||||| Sbjct 8092 AACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATATT 8033 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 || |||||| ||||| || || |||||||||| |||||| | | || Sbjct 8032 GTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAGT 7973 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 |||||| || || || ||| ||||| ||| | || | || ||| | | || Sbjct 7972 ATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGCTG 7913 Query 80325 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 80384 ||||| ||||||| | || || | |||||||| || || ||||| | | || Sbjct 7912 AGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTGA 7853 Query 80385 CAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCG 80442 || || | ||| || ||||| |||| |||| ||| | ||| || || | | Sbjct 7852 CATGAGGTGGTATGTAGTGATAGCGGATTGGATAT--CATCGCCATGGATACCAATGCTG 7795 Query 80443 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAA 80502 || ||||| | | || || |||||||||| || || | | ||||| | |||| Sbjct 7794 ACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACTTTCAGGAGGTAA 7735 Query 80503 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 || |||| | ||||| || ||||| ||||| || Sbjct 7734 GACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATA 7700 >seq7572 Length=6253 Score = 89.7 bits (98), Expect = 7e-13 Identities = 198/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 |||||||| || || || || || ||||| | || || | || || ||||| || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 50329 CAAAATCGTT--CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | ||| ||| | | | ||||| || || || || || ||||| || || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT--CCAATCATTGA-TAT 50443 | | || ||||||| | ||||||| ||||| ||||| || | |||| | | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGT 178 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | | || | ||| |||||||| || ||||| || || || || ||||| ||||| | Sbjct 179 CGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTT 238 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 ||| || || || ||| |||||||| | || ||||||||||| || ||| Sbjct 239 GCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718199226688360