Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5042 214 2e-50 >seq5042 Length=7215 Score = 214 bits (236), Expect = 2e-50 Identities = 575/864 (67%), Gaps = 29/864 (3%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || || ||||| | ||||||||||| |||||||| |||| || || || | Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATA 5444 Query 13641 TCCATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| ||||| ||||| ||| |||| | | | ||| ||||||| || || Sbjct 5445 TCCATGAAATCGAATGG-GTTAGTGACGTGATAATGTTTGCTGAAACCTAGAGACAAAAG 5503 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | ||||||| ||| || ||||| || |||||||| | | |||||| |||||||| Sbjct 5504 TAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAG 5563 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||| | | | ||||| ||||||| ||| || | || ||||| || Sbjct 5564 GGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTC---AGCAAC 5620 Query 13820 AATTG-TAATA--ATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13876 || | ||||| | || | ||| || | | || | ||| || | || || | Sbjct 5621 GATGGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCC 5680 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 |||||| ||||| || || ||||||| ||||||||||| || || || | || || Sbjct 5681 AAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGG 5740 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||| | || || ||||| | ||| || || || ||||| || || ||||| || || Sbjct 5741 CATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCC 5800 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA------ 14050 ||||| || ||| || | || ||| ||||| || ||||||| || Sbjct 5801 TTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAA----GC--TTTTGTTAGAGTCATC 5854 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | |||||| | || ||||| ||||| | || ||| || || || Sbjct 5855 AATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTT 5914 Query 14111 AAATA--AATATTCCTTC-TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 | || || || ||| | ||| | ||| ||||| ||||||||||| | | || Sbjct 5915 GAGTAGGAAGTCTCTTTCAACGTTA-TCTTTG--ATGTAAGTATCAATAAGCATGGAGTA 5971 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||||| ||| |||||||| || || || ||||||||||| || | ||||| | Sbjct 5972 CATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGG 6031 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| | ||| | || | | ||||| || || |||||||| || || Sbjct 6032 GATTTGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGC 6091 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTT-GAGTTTTTTC 14345 || || || || | ||||| || ||||| ||| || | || ||| | | ||||| Sbjct 6092 AGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTC 6151 Query 14346 CAATCGGATA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 | | | | || | || ||||| ||||| ||||| ||||| ||||| || |||| Sbjct 6152 CCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGC 6211 Query 14405 TTTTTTATACATTACCCATATTTC 14428 |||||| |||||| ||||||||| Sbjct 6212 TTTTTTGTACATTTGCCATATTTC 6235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479681532346600