Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5042 214 2e-50 >seq5042 Length=7215 Score = 214 bits (236), Expect = 2e-50 Identities = 573/860 (67%), Gaps = 21/860 (2%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| || || ||||| | |||||||| || |||||||| |||| || || || | Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATA 5444 Query 13429 TCCATAAAATCGAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||||||||||| || | |||| | | | ||| ||||||| || | Sbjct 5445 TCCATGAAATCGAATGGGTTAG-TGACGTGATAATGTTTGCTGAAACCTAGAGACAAAAG 5503 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||| | ||||||| ||| || ||||| || |||||||| | | |||||| |||||||| Sbjct 5504 TAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAG 5563 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||||| | | | |||||| ||||||| ||| || | || ||||| | || Sbjct 5564 GGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGAT 5623 Query 13608 AATCTTA-ATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 || | || | || | ||| || | | || | ||| || | || || ||| Sbjct 5624 -GGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCCAA 5682 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||| ||||| || || ||||||| ||||||||||| || || || | || |||| Sbjct 5683 AATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGGCA 5742 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | | || || ||||| | ||| || || || || || || || ||||| || || | Sbjct 5743 TGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCCTT 5802 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT--TTTGTTTGAT--ATC 13842 |||| || ||| || |||| ||| ||||| ||||| || | | || ||| Sbjct 5803 CAACGACACAAAAAGCAGCCAGTCTTTCGCCAAA----GCTTTTGTTAGAGTCATCAATC 5858 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 || | |||||| | || ||||| ||||| | || ||| | || |||| | Sbjct 5859 CACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGT 5918 Query 13903 A--AATGTTCCTTC-TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 | || || ||| | ||| | ||| ||||| ||||||||||| | | |||||| Sbjct 5919 AGGAAGTCTCTTTCAACGTTA-TCTTTG--ATGTAAGTATCAATAAGCATGGAGTACATT 5975 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||| ||| |||||||| || || || |||||||||||||| | ||||| | | Sbjct 5976 TCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATT 6035 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || | ||| | | | | |||||| || || |||||||| || || || Sbjct 6036 TGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCG 6095 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTT-GAGTTTTTTCCAAT 14137 || || || | ||||| || ||||| ||| || | || ||| | | |||||| | Sbjct 6096 AAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAG 6155 Query 14138 CGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 | | || | || ||||| ||||| ||||| ||||| ||||| || |||||||| Sbjct 6156 TGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTT 6215 Query 14197 TTATACATTACCCATATTTC 14216 || |||||| ||||||||| Sbjct 6216 TTGTACATTTGCCATATTTC 6235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542442692360