Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5042 241 2e-58 seq2634 174 2e-38 seq7572 93.3 6e-14 >seq5042 Length=7215 Score = 241 bits (266), Expect = 2e-58 Identities = 604/910 (66%), Gaps = 12/910 (1%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| || |||||||| || | || || ||||| || |||||||| || |||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 || || || | ||||||||||| || || || || || | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 41881 CA-ATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 | | || || | || | || || | ||||| ||||| ||| | || | || Sbjct 5492 TAGAGACAAAAGTAAA-CGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTAT 5550 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||||||||| || || || || | |||| | ||||||||||| || | || | Sbjct 5551 TCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGG 5610 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 | || | | || | | || | |||||||| || | | | | ||| |||| Sbjct 5611 CCTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACA 5670 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 | || | |||||| ||| ||||| || ||||||| || | ||||||||| || | Sbjct 5671 ATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAG 5730 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | || |||||||| |||||||||||||| ||||| || || | ||||| || ||| | Sbjct 5731 TAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGA 5790 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 42236 ||||||| ||||| || | ||| ||| ||||| || ||| | | | | || Sbjct 5791 AGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGT 5850 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 ||| ||||||| ||||||| | ||||| || || | || || || ||| | || Sbjct 5851 CATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGG 5910 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | || | || ||| | ||||| ||||||| | || ||||| || | | | Sbjct 5911 CGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGT 5970 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || ||||||||||| || || || || || ||||| | ||| || | Sbjct 5971 ACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAG 6030 Query 42417 TAACCTGTACTTCTGTACAAAATCGTT--CAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 | || ||||| || | ||| ||| | | | |||||||| || || || || || Sbjct 6031 GGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCT 6088 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-- 42532 ||| || || || || | | | || ||||||||| |||||| |||| ||| Sbjct 6089 GGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATT 6148 Query 42533 TTCCAATCATTGA-TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 |||| | |||| | || | || | ||| |||||||| || ||||| || ||||| Sbjct 6149 TTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTC 6208 Query 42592 TGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 || ||||| ||||| | ||| || || || ||| |||||||| | || |||||||| Sbjct 6209 AGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATT 6268 Query 42652 TGGATTTGGT 42661 ||| || ||| Sbjct 6269 TGGGTTGGGT 6278 >seq2634 Length=12318 Score = 174 bits (192), Expect = 2e-38 Identities = 569/876 (65%), Gaps = 11/876 (1%) Strand=Plus/Minus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 |||||||||||||| || | || || ||||| | |||||||| ||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 ||||| || || || || || || | ||||| |||||||| || || || |||| ||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 71872 GCTTTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTCTTT---TCTCTTTCGTA 71927 || | ||||| | || | || || | | | | || | | ||||||| Sbjct 8451 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGT-TTTCGTA 8393 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 || | || | | ||||||| || |||||| | | ||| ||||| ||||| Sbjct 8392 TTTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATG 8333 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 || || | |||||||| || || | || || || ||| || || |||||||| Sbjct 8332 GGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAAT 8273 Query 72048 CCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 ||||||| | || || || || | || | || || || || || ||| ||| | | Sbjct 8272 CCAAAGACCGTAGAACAAG-TCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTA 8214 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 | | | || | | ||| || | |||||| ||||| | ||| ||||| | | || | Sbjct 8213 GGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTG 8154 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | |||||||| || || || || | |||||||||||| | || | ||| | ||||| Sbjct 8153 GACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTG 8094 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 ||| ||| || || || | ||||||||| |||| ||| || ||| | |||||||||| Sbjct 8093 GAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATAT 8034 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || || |||||| ||||| || || |||||||||| |||||| | | | Sbjct 8033 TGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAG 7974 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 ||||||| || || || || |||||| ||| | || | || ||| | | | Sbjct 7973 TATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGCT 7914 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | ||||| ||||||| | || || | |||||||| || || ||||| | | | Sbjct 7913 GAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTG 7854 Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGC 72524 ||| || | ||| || ||||| |||| |||| ||| | ||| || || | Sbjct 7853 ACATGAGGTGGTATGTAGTGATAGCGGATTGGATAT--CATCGCCATGGATACCAATGCT 7796 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 72584 ||| ||||| | | | || |||||||||| || || | | ||||| | ||| Sbjct 7795 GACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACTTTCAGGAGGTA 7736 Query 72585 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 || |||| | ||||| || ||||| ||||| || Sbjct 7735 AGACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATA 7700 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 70837 AGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 70896 || |||||||||||||| || | || |||| || ||||| ||||| || ||| Sbjct 9621 AGGTAGTACATGCCTGTCTTCAAGCCTTTCTTCCAGCCATAAAAGTGCATGGAAGTGAGT 9562 Query 70897 TTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCT 70956 || || | || | | | ||||||||||| | ||||| |||||||| ||| | ||| Sbjct 9561 TTTTGGTAATTTGGGTTGTCCATGTGAATATTGAGGGACTGGCTTTGATCAATGTAAGCT 9502 Query 70957 CCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 || | ||| |||| | | ||||| | ||||||| |||||| ||| |||||| || Sbjct 9501 CCACGGTCGGCAGATAAATCAATGATGGCCTTTTGTTTAATTTCATAAACAGTTTTGTA 9443 >seq7572 Length=6253 Score = 93.3 bits (102), Expect = 6e-14 Identities = 199/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 |||||||| || || || || || ||||| | ||| || | | || ||||| || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 42434 CAAAATCGTT--CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | ||| ||| | | | |||||||| || || || || ||||| || || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT--CCAATCATTGA-TAT 42548 | | || ||||||||| |||||| |||| ||||| || | |||| | | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGT 178 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | | || | ||| |||||||| || ||||| || ||||| || ||||| ||||| | Sbjct 179 CGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTT 238 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 ||| || || || ||| |||||||| | || ||||||||||| || ||| Sbjct 239 GCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671074191779240