Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5042 165 1e-35 seq7572 84.2 3e-11 >seq5042 Length=7215 Score = 165 bits (182), Expect = 1e-35 Identities = 513/784 (65%), Gaps = 29/784 (4%) Strand=Plus/Minus Query 124985 TAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCA 125044 |||||| ||| || || || | | || || || ||| ||||||||||||| ||| | Sbjct 6266 TAGATTCGTCCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAAAAAGCTGA 6207 Query 125045 GGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC-CTGTACGATTGGGAGA 125103 ||| || ||||| || ||||| ||||||||||| | ||| || || | ||||| | Sbjct 6206 AGCCAGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAAC-ACTGGGAAA 6148 Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163 | | ||||| | || || | ||||| | |||| | |||||||| || | | Sbjct 6147 ATAAGCTAACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTTCTTCGCTGCCA 6088 Query 125164 CCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCA 125222 |||||| ||||||||||| || || || | || || | ||| | || || Sbjct 6087 GCGATGGTATCGTCAACGAAAACCTCGTCGCCAACTTTGGAACTGAAGTCCAA-ATCCCT 6029 Query 125223 GAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC 125282 || | || ||||| || |||||||| |||||||| ||| | ||| ||||||||| Sbjct 6028 GAAGCCCGCTGTTTTTATGGTTTCCAAATTATGATTGAAAACATCCACAGTGAAATGTAC 5969 Query 125283 TCTACACTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAA 125338 || | || ||||| | ||||| ||| ||||| | | || | || | || Sbjct 5968 TCCATGCTTATTGATACTTACATCAAAGAT----AACGTTGAAAGAGACTTCCTACTCAA 5913 Query 125339 CGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGA 125398 ||| | | | | || | || ||||||||| | |||| || |||||| || Sbjct 5912 CGCCGTTCAAAACATCCCCTGCATTAAGAAAAAGGCTAACTGGGCTCTTGAGTGGATTGA 5853 Query 125399 TGACG---ACAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 |||| |||| ||| | ||| ||||||| || || | ||| || |||| Sbjct 5852 TGACTCTAACAAAAGCTTTGG----CGAAAGACTGGCTGCTTTTTGTGTCGTTGAAGGCA 5797 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 ||||||| || |||||| |||||||| |||||||| ||||| || |||||||||| Sbjct 5796 TCTTCTTCAGTGGCTCTTTTGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTCATGCCCG 5737 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCA 125574 | || || | ||||| |||| | | ||||||| || || ||| || |||| | Sbjct 5736 GTCTTACTTTCTCCAACGAACTTATCTGTAGAGACGAAGGTCTTCACACCGATTTTGGCT 5677 Query 125575 TTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCA 125634 ||| |||| ||| || || | || || || || ||||| | | Sbjct 5676 GCCTATTGTT---CAAATACCT-CATC-----AACAAGCCCTCTGAAGAAAAAATATTAG 5626 Query 125635 ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCA 125694 ||| || | || ||||| | || |||||||| || |||| || || ||||| ||| Sbjct 5625 CCATCGTTGCTGAGGCCGTTACCATCGAACAAGAATTCTTAACTGACTCACTACCTGTCT 5566 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC 125754 | | || || ||||| |||| |||||| | |||| || || ||||| || || ||| Sbjct 5565 CCCTAATAGGAATGAATAGCAAATTAATGTCCCAGTATATCGAATTTGTTGCTGACCGTT 5506 Query 125755 TACT 125758 |||| Sbjct 5505 TACT 5502 >seq7572 Length=6253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 124985 TAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCA 125044 |||||| ||| || || || | | || || || ||| ||||||||||||| ||| | Sbjct 279 TAGATTCGTCCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAAAAAGCTGA 220 Query 125045 GGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC-CTGTACGATTGGGAGA 125103 ||| || ||||| || ||||| ||||||||||| | ||| || || | ||||| | Sbjct 219 AGCCAGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAAC-ACTGGGAAA 161 Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163 | | ||||| | || || | ||||| | |||| | |||||||| || | | Sbjct 160 ATAAGCTAACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTTCTTCGCTGCCA 101 Query 125164 CCGATGGAATCGTCAACGACAATCT 125188 |||||| ||||||||||| || || Sbjct 100 GCGATGGTATCGTCAACGAAAACCT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740987419153240