Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5539 118 8e-22 seq923 118 8e-22 >seq5539 Length=6842 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || |||||||| |||||||||||| | | | | ||||| Sbjct 984 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTC 1043 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || |||||| || ||| | ||||| ||||| || || ||||||||||| || || Sbjct 1044 TAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 1103 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| || ||| | || || | ||| | |||||| || | || |||||||| Sbjct 1104 GATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTT 1163 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| ||||||||||| ||||| Sbjct 1164 ACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq923 Length=21762 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || ||| || || || ||||| |||||||| |||||||| || | Sbjct 10360 CCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 10419 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| | ||||| || ||| | || | |||||| ||||| ||| Sbjct 10420 AAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10479 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| |||||| ||| || | || || || || | ||| || Sbjct 10480 ATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10539 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || || |||||||| || || ||||| |||||||||||| Sbjct 10540 TCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCATA 10587 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | | || ||| || || || ||||| |||||||| |||||||| || Sbjct 10588 CCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAC 10647 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| | ||||| || ||| | || | |||||| ||||| ||| Sbjct 10648 AAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10707 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||| || | || || || || | ||| || Sbjct 10708 ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10767 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| || || |||||||| |||||||| || ||||||||||| || Sbjct 10768 TCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTT 10817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362144995456809