Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5539 107 1e-18 seq7711 87.8 1e-12 seq6735 87.8 1e-12 seq1303 87.8 1e-12 >seq5539 Length=6842 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||||||||||| || |||||| || ||| |||| || Sbjct 985 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCT 1044 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || || || ||||| |||||||| || |||| | ||||| |||||| Sbjct 1045 AGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1104 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||||||||| || | ||| || ||| | | || || || | || || |||||| Sbjct 1105 ATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTA 1164 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| || ||||| Sbjct 1165 CCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq7711 Length=15848 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || ||||| || || | | |||||| || |||| | ||||| | Sbjct 10709 CATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCT 10768 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| || ||||||||||| | | | | || | | || || |||| |||| Sbjct 10769 TATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAA 10828 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | |||||||||||||| || || ||||| || |||||| Sbjct 10829 TAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATG 10866 >seq6735 Length=1584 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || ||||| || || | | |||||| || |||| | ||||| | Sbjct 1056 CATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCT 1115 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| || ||||||||||| | | | | || | | || || |||| |||| Sbjct 1116 TATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAA 1175 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | |||||||||||||| || || ||||| || |||||| Sbjct 1176 TAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATG 1213 >seq1303 Length=22699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || ||||| || || | | |||||| || |||| | ||||| | Sbjct 4575 CATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCT 4516 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| || ||||||||||| | | | | || | | || || |||| |||| Sbjct 4515 TATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAA 4456 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | |||||||||||||| || || ||||| || |||||| Sbjct 4455 TAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATG 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354744094470852