Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5042 194 1e-44 seq7572 89.7 4e-13 >seq5042 Length=7215 Score = 194 bits (214), Expect = 1e-44 Identities = 561/857 (65%), Gaps = 15/857 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || |||||||| | |||||||| || || ||||| |||| | || || | Sbjct 5385 TTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTGCATAGAGATCATA 5444 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| |||||||| || || | ||| | ||| | | |||| | | Sbjct 5445 TCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACCTAGAGACAAAAGT 5504 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 || | |||||||||||| || || ||||| |||||| | | ||||||||||||| Sbjct 5505 AAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTATTCATTCCTATTAGG 5564 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 ||||| | | || ||||| || | || ||| || ||| || || ||| ||| Sbjct 5565 GAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGGCCTCAGCAACGATG 5624 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGAT--TTGAT-AGATGCTTAAACATCATACATGCA 13156 || |||| || ||| | || | ||||| || | || |||| | || || Sbjct 5625 GCTAATATT---TTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACAATAGGCAGCCA 5681 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 ||||| ||| | ||||| ||||||| || || ||||| || || || ||||| ||| Sbjct 5682 AAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAGTAAGACCGGGC 5741 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || || || || ||||| | ||| || || || ||||| || || || || || ||| Sbjct 5742 ATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGAAGAAGATGCCT 5801 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTT--ACTC-TCTATC 13333 ||||| | ||| || || ||||| ||| | || || || | || || ||| Sbjct 5802 TCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAA---GCTTTTGTTAGAGTCATCAATC 5858 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 |||| |||||||| || |||| |||| |||| || |||| | ||||| | | Sbjct 5859 CACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGGCGTTGAGT 5918 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | | | | |||| | ||| || |||||||| || | | | |||||||| Sbjct 5919 AGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGTACATTTCA 5978 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || ||||| ||| |||||||||||||||||||| | || || | | || Sbjct 5979 CTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGG 6038 Query 13514 ACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 ||||| | ||| | | | | ||||||||| || || || || || ||||| || Sbjct 6039 ACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAG 6098 Query 13574 aaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACCAATCT 13630 || || || |||| ||| ||||| | | ||||||| || | | | ||| ||| | | Sbjct 6099 AAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGT 6158 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 || || | ||| | ||| || || ||||||||||| ||| || |||| || || Sbjct 6159 TGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTG 6218 Query 13691 TACATCATCCATATATC 13707 ||||| |||||| || Sbjct 6219 TACATTTGCCATATTTC 6235 >seq7572 Length=6253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/248 (68%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAG 13522 ||||| ||| |||||||||||||||||||| | || || | | || ||||| | Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 13523 TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGT 13582 ||| | | | | ||||||||| || || || || || ||||| || || || || Sbjct 61 CCAAAGTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGG 120 Query 13583 ATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACCAATCTGGAAAATCT 13639 |||| ||| ||||| | | ||||||| || | | | ||| ||| | | || || Sbjct 121 ATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGTCG 180 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATC 13699 | ||| | ||| || || ||||||||||| ||| || |||| || || ||||| | Sbjct 181 TGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTGC 240 Query 13700 CATATATC 13707 ||||| || Sbjct 241 CATATTTC 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430941697618098