Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5042 178 3e-39 seq5539 136 9e-27 seq923 122 2e-22 seq7572 89.7 1e-12 >seq5042 Length=7215 Score = 178 bits (196), Expect = 3e-39 Identities = 601/920 (65%), Gaps = 37/920 (4%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT--GATATATGGAGGATGTACA 268748 |||||| ||||||| || | || |||||| | |||| || |||||| ||||||| Sbjct 6274 AACCCAAATAGATTCGTCCTCTTCCCAATAAA--ATGGCACGAAATATGGCAAATGTACA 6217 Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG 268808 || | || | || ||| ||||| || |||||||| |||||||| | ||| | Sbjct 6216 AAAAAGCTGAAGCCAGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAAC 6157 Query 268809 ATTGGAAAAATTTAA---AACC-AGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTT 268863 | ||| ||||| || ||| | || |||||| ||||| | || || || || Sbjct 6156 ACTGGGAAAAT--AAGCTAACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTT 6099 Query 268864 TTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGT 268923 || || | || ||||||||||| |||||||| || || | || || | || || Sbjct 6098 CTTCGCTGCCAGCGATGGTATCGTCAACGAAAACCTCGTCGCCAACTTTGGAACTGAAGT 6039 Query 268924 ACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTC 268983 || || ||||||||| | |||||||| || ||||| || || ||||| || || Sbjct 6038 CCAAATCCCTGAAGCCCGCTGTTTTTATGGTTTCCAAATTATGATTGAAAACATCCACAG 5979 Query 268984 AGAGATGTACAGTCTAT--TAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGA 269041 || |||||| || || | || |||||||| || | |||||| |||| ||| Sbjct 5978 TGAAATGTAC--TCCATGCTTATTGATACTTACATCAAAGATAACGTTGAAAG----AGA 5925 Query 269042 CTATTTTCTT-----CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTC 269096 || | || | | | ||| || ||| | | ||||| || | ||||||| Sbjct 5924 CTTCCTACTCAACGCCGTTCAAAAC-ATCCCCTGCATTAAGAAAAAGGCTAACTGGGCTC 5866 Query 269097 TGAAATGGATAAACGA---TAGCGC--GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 | | ||||| | || || | || || || ||||| | | ||||||| | Sbjct 5865 TTGAGTGGATTGATGACTCTAACAAAAGCTTT--GGCGAAAGACTGGCTGCTTTTTGTGT 5808 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 || ||||| || ||||| || ||||||||||| ||||| ||| | || || | || Sbjct 5807 CGTTGAAGGCATCTTCTTCAGTGGCTCTTTTGCCGCCATCTTCTGGCTCAAAAAGCGTGG 5748 Query 269212 CCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTG 269271 ||| ||||| || | |||||||| |||||| | || | || ||||||||| | ||| Sbjct 5747 CCTCATGCCCGGTCTTACTTTCTCCAACGAACTTATCTGTAGAGACGAAGGTCTTCACAC 5688 Query 269272 CGACTTCGCTTGTTTATTATTTACTAATTATCT-TTCACACAAACCTTCTCAAGATAGAG 269330 ||| || | || |||| || || || || ||| |||| || ||| |||| | | Sbjct 5687 CGATTTTGGCTGCCTATTGTT---CAAATACCTCATCA-ACAAGCCCTCTGAAGAAAAAA 5632 Query 269331 TATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTAT 269390 ||| | || | | | || ||| | | ||| |||||| |||| || | ||| Sbjct 5631 TATTAGCCATCGTTGCTGAGGCCGTTACCATCGAACAAGAATTCTTAACTGACTCACTAC 5572 Query 269391 CTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTG 269450 || || || || || ||||||||||||| ||| | ||||| | || || ||| Sbjct 5571 CTGTCTCCCTAATAGGAATGAATAGCAAATTAATGTCCCAGTATATCGAATTTGTTGCTG 5512 Query 269451 ATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTT 269510 | | || || ||||| |||| || || ||| | ||| |||| || || || || Sbjct 5511 ACCGTTTACTTTTGTCTCTAGGTTTCAGCAAACATTATCACGTCACTAACCCATTCGATT 5452 Query 269511 TTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACT 269570 | ||||| | || || | |||| || |||||||||| || ||||| || || ||| Sbjct 5451 TCATGGATATGATCTCTATGCAAGGCAAAACTAATTTCTTTGAAAAGCGCGTTAGCGACT 5392 Query 269571 ATCAGAAAATGGGTGTAATG 269590 | || || ||||| ||| Sbjct 5391 ACCAAAAGGCCGGTGTTATG 5372 >seq5539 Length=6842 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || || || | || | || |||||||||||||| || Sbjct 997 GTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCTAGTTGTTTACCG 1056 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | || ||||| ||||| |||||||| ||||| || || ||| ||| Sbjct 1057 GCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTTTGTTTA 1116 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | ||| || |||||| || || || || || ||||| ||||| || Sbjct 1117 ACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTACCTGTAAGAGTC 1176 Query 104543 TTTACAAATATCTGCATT 104560 |||||||| ||||||||| Sbjct 1177 TTTACAAAAATCTGCATT 1194 >seq923 Length=21762 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || |||||||| || || || |||||| Sbjct 10357 ATACCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCA 10416 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | |||||||| || ||||| || || ||||| || | || || || || Sbjct 10417 GATAAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGT 10476 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| || || ||||| || ||||| || || || | || || || ||| Sbjct 10477 GGGATTCCTTCCTTGTCTTGAATTTTCTGCTTG-ACGTTGTCAATTGTGTCTGAAGATTC 10535 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||||||||| ||||| || ||||| || || ||||| Sbjct 10536 GACTTCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 114 bits (126), Expect = 3e-20 Identities = 182/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || |||||||| || || || |||||| Sbjct 10585 ATACCGCCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCA 10644 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | |||||||| || ||||| || || ||||| || | || || || || Sbjct 10645 GACAAAGTGCGGCCGTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGT 10704 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| || || || || || ||||| || || || | || || || ||| Sbjct 10705 GGGATTCCTTCCTTGTCTTGGATTTTCTGCTTG-ACGTTGTCAATTGTGTCTGAAGATTC 10763 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTAC 104568 || || || || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 10764 GACTTCAAGGGTGATAGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATGTTGTG-AT 10822 Query 104569 AGTATTTATTAGAGTAA 104585 || ||| | |||| || Sbjct 10823 AGAATTAACGAGAGAAA 10839 >seq7572 Length=6253 Score = 89.7 bits (98), Expect = 1e-12 Identities = 191/279 (68%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT--GATATATGGAGGATGTACA 268748 |||||| ||||||| || | || |||||| | |||| || |||||| ||||||| Sbjct 287 AACCCAAATAGATTCGTCCTCTTCCCAATAAA--ATGGCACGAAATATGGCAAATGTACA 230 Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG 268808 || | || | || ||| ||||| || |||||||| |||||||| | ||| | Sbjct 229 AAAAAGCTGAAGCCAGTTTCTGGACCGTTGAAGAAGTCGATCTGTCACACGACACTCAAC 170 Query 268809 ATTGGAAAAATTTAA---AACC-AGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTT 268863 | ||| ||||| || ||| | || |||||| ||||| | || || || || Sbjct 169 ACTGGGAAAAT--AAGCTAACTGATAACGAAAGATATTTTATCAAGAACATCCTCGCCTT 112 Query 268864 TTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGT 268923 || || | || ||||||||||| |||||||| || || | || || | || || Sbjct 111 CTTCGCTGCCAGCGATGGTATCGTCAACGAAAACCTCGTCGCCAACTTTGGAACTGAAGT 52 Query 268924 ACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGAT 268962 || || ||||||||| | |||||||| || ||||| || Sbjct 51 CCAAATCCCTGAAGCCCGCTGTTTTTATGGTTTCCAAAT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151284084489292