Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5539 116 3e-21 seq7711 102 7e-17 seq6735 102 7e-17 seq1303 102 7e-17 >seq5539 Length=6842 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||| ||||| | ||| |||||| || || | ||| || Sbjct 985 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTACGGCCATCTTCT 1044 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| | || || || | |||||||||||||||||| ||||| || || | Sbjct 1045 AGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 1104 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 |||||| || || | | || |||| || || |||| || |||||||| Sbjct 1105 ATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACTTCAAGAGTTATGGTTTTA 1164 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATTT 95022 || |||||||| || ||||| |||||||| || | ||| || || Sbjct 1165 CCTGTAAGAGTCTTTACAAAAATCTGCATTCTAAAAACGTAATT 1208 >seq7711 Length=15848 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||||||||| | ||| || ||| | || || || ||| | Sbjct 10657 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCG--GAGAGGGTGCGACCATCTT 10714 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || | || || | ||||||||||||||||||||| ||||| || || | Sbjct 10715 CCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTT 10774 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||| |||||| ||| | ||| | | ||||| || | || || |||| Sbjct 10775 GGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTT 10834 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | ||||| ||||||||||||||| Sbjct 10835 TACCGGTTAAGGTTTTGACAAAGATCTGCATG 10866 >seq6735 Length=1584 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||||||||| | ||| || ||| | || || || ||| | Sbjct 1004 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCG--GAGAGGGTGCGACCATCTT 1061 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || | || || | ||||||||||||||||||||| ||||| || || | Sbjct 1062 CCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTT 1121 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||| |||||| ||| | ||| | | ||||| || | || || |||| Sbjct 1122 GGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTT 1181 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | ||||| ||||||||||||||| Sbjct 1182 TACCGGTTAAGGTTTTGACAAAGATCTGCATG 1213 >seq1303 Length=22699 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||||||||| | ||| || ||| | || || || ||| | Sbjct 4627 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGG--AGAGGGTGCGACCATCTT 4570 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || | || || | ||||||||||||||||||||| ||||| || || | Sbjct 4569 CCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTT 4510 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||| |||||| ||| | ||| | | ||||| || | || || |||| Sbjct 4509 GGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTT 4450 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | ||||| ||||||||||||||| Sbjct 4449 TACCGGTTAAGGTTTTGACAAAGATCTGCATG 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247777393640