Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5042 259 6e-64 seq2634 187 3e-42 seq7572 84.2 3e-11 >seq5042 Length=7215 Score = 259 bits (286), Expect = 6e-64 Identities = 610/911 (67%), Gaps = 14/911 (2%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| || |||||||| || | || || ||||| || ||||||||||| |||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 || || || | ||||||||||| || || || || || | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 33120 CA-ATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 | | || || | || | || || || ||||| ||||| ||| | || | || Sbjct 5492 TAGAGACAAAAGTAAA-CGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTAT 5550 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||||||||| || || || || | |||| | ||||||||||| |||| || | Sbjct 5551 TCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGG 5610 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAATGTTTAAAC 33297 | || | | || | | | |||||||| || | | || | | | ||| ||| Sbjct 5611 CCTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATTTGAAC 5669 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | | || | |||||| ||| ||||| |||||||||| || ||||||||||| || Sbjct 5670 AATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAA 5729 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || |||||||| |||||||||||||| ||||| || |||| || || || ||| Sbjct 5730 GTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTG 5789 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---G 33474 |||||||| ||||| || || ||| ||| ||||| || ||| | | | | | Sbjct 5790 AAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAG 5849 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 |||| ||||||| ||||||| | ||||| || || | || || || ||| | | Sbjct 5850 TCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACG 5909 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || || | || ||| | ||||| ||||||| | |||||||| || | | Sbjct 5910 GCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAG 5969 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || ||||||||||| || || || || || ||||| | || || Sbjct 5970 TACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCA 6029 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTT--CCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | || || ||||| || | ||| ||| | | | ||||| || || || || || | Sbjct 6030 GGGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGC 6087 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA- 33771 |||| || || || || | | | || ||||||||| |||||| ||||| ||| Sbjct 6088 TGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTAT 6147 Query 33772 -TTCCAATCATTGA-TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 |||| | |||| | || | || | ||| |||||||| || ||||| || || | Sbjct 6148 TTTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTT 6207 Query 33830 CTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT 33889 | || ||||| ||||| | ||| || || | ||| |||||||| | || ||||||| Sbjct 6208 CAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTAT 6267 Query 33890 TTGGATTTGGT 33900 |||| || ||| Sbjct 6268 TTGGGTTGGGT 6278 >seq2634 Length=12318 Score = 187 bits (206), Expect = 3e-42 Identities = 573/877 (65%), Gaps = 13/877 (1%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 || ||||||||||| || | || || ||||| | |||||||| ||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 ||||| || || || || || ||| ||||||| |||||||| || || || |||| ||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 63066 GCTTTCCAGACGACTCGAGCCTTTAT----TATAGATTTGTATCTCCTTTCTCTTTCGTA 63121 || | ||||| | || | || | || | || | | | ||||||| Sbjct 8451 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGT-TTTCGTA 8393 Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | | || | | ||||||| || |||||||| | | | ||||| ||||| Sbjct 8392 TTTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATG 8333 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 || || | || ||||| || |||| ||| || || ||| || || |||||||| Sbjct 8332 GGGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAAT 8273 Query 63242 CCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63300 ||||||| | || || || || | || | || ||| || || || ||| ||| | | Sbjct 8272 CCAAAGACCGTAGAACAAG-TCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTA 8214 Query 63301 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 | | | || | | ||| || | |||||| ||||| | ||| ||||| | | || | Sbjct 8213 GGTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTG 8154 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | |||||||| || || || || | |||||||||||| | || | ||| | ||||| Sbjct 8153 GACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTG 8094 Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT 63480 ||| ||| ||||| || |||||||||| |||| ||| || ||| | |||||||||| Sbjct 8093 GAACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATAT 8034 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 | || |||||| ||||| || || |||||||||| |||||| | | | Sbjct 8033 TGTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAG 7974 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63600 | ||||| ||||| || ||| ||||| ||| | || | || ||| | | | Sbjct 7973 TATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGCT 7914 Query 63601 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63660 | ||||| ||||||| | || || | |||||||| || || ||||| | | | Sbjct 7913 GAGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTG 7854 Query 63661 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGC 63718 | | || | ||| || ||||| || | |||| ||| | ||| || || | ||| Sbjct 7853 ACATGAGGTGGTATGTAGTGATAGCGGATTGGATAT--CATCGCCATGGATACC-AATGC 7797 Query 63719 -GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777 ||| ||||| | | || || |||||||||| || || || | ||||| | || Sbjct 7796 TGACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACTTTCAGGAGGT 7737 Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 | || |||| | ||||| || ||||| ||||| || Sbjct 7736 AAGACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATA 7700 >seq7572 Length=6253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 |||||||| || || || || || ||||| | || || | || || ||||| || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 33673 CAAAATCGTTC-CGCCAAA-TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | ||| ||| || | | ||||| || || || || || ||||| || || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT--CCAATCATTGA-TAT 33787 | | || ||||||||| |||||| ||||| ||||| || | |||| | | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGT 178 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 | | || | ||| |||||||| || ||||| || || || || ||||| ||||| | Sbjct 179 CGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTT 238 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 33900 ||| || || | ||| |||||||| | || ||||||||||| || ||| Sbjct 239 GCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622886859776840