Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2634 203 8e-47 >seq2634 Length=12318 Score = 203 bits (224), Expect = 8e-47 Identities = 520/782 (66%), Gaps = 15/782 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | || ||| | | ||| |||||||| | ||| ||| | ||| Sbjct 7865 TTTACTCATGCCTCTCCTACACTTTTCAACTCTGGAACTAATCGTCCTCAGCTAAGTTCC 7924 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | |||| |||| |||| || |||||||| ||||| | ||| || | | Sbjct 7925 TGCTTCTTGCTAACAATGCAGGATGACTCCATCGAAGGTATTTATGATACTATCTCCCAA 7984 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || ||| || || || ||| || ||||||||| || ||||||||| |||||||| Sbjct 7985 TGCGCTAAAATCTCTAAATCTGCTGGTGGAATTGGTCTAAGTATCCACAATATTCGTGCA 8044 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCG 363785 | |||||| ||| || || |||| |||| || | ||||| ||||| | Sbjct 8045 ACTGGCTCTTACATCGCCGGAACCAATGG-TACTTCGAACGGAATTGTTCCAATGCTCCA 8103 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || ||| ||| || || ||||||||||| || || || || ||| || || Sbjct 8104 AGTATTCAACACTACCGCTAGATACGTCGACCAAGGCGGCAACAAACGTCCAGGCGCCTT 8163 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || || || || || |||||||| |||||||| ||| | | || | ||||| Sbjct 8164 CGCCATTTACCTTGAACCATGGCATGCCGACATTTTTGAATTTTTAAACCTAAGAAAAAA 8223 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||| || ||||| ||| ||||| ||||| ||||||| | |||||| || |||||| Sbjct 8224 TCAC-GGTAAAGAAGAAAATCGTGCCCGTGACTTGTTCTACGGTCTTTGGATTCCTGACC 8282 Query 363965 ATTTTATGAAGCGCG---TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 ||| ||| |||| |||| ||| | |||||| | || ||||| || ||| Sbjct 8283 TTTTCATGCGCCGCGTTTTGGAAAACGGT---GACTGGTCATTATTCTGCCCCCATGAAG 8339 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA- 364080 || ||||| | || || ||||| || | | | || || ||| ||| || ||| Sbjct 8340 CCCCTGGTCTAGCTGACGTTTGGGGCGAGAAGTTCGATGAACTCTACCTAAAATACGAAA 8399 Query 364081 --TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 | || || |||| || || | || ||| | || |||| || || | | Sbjct 8400 ACACTGAAGGTCTTCCTCGCAAACGCATCACTGCCCAGCAACTCTGGTACGCTATTTTAG 8459 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 |||| || || || || ||||| || || ||| | |||||||| | || ||| |||| | Sbjct 8460 ATTCCCAAATCGAAACTGGAACTCCATACATGCTCTACAAAGACGCTTGTAACGGCAAAT 8519 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAA 364257 | ||||| || |||| || |||||| | || | ||||| || || || || ||||| Sbjct 8520 CTAACCAACAAAACCTCGGAACAATT-AAAAGCTCAAACCTTTGCACTGAAATCGTTGAA 8578 Query 364258 TACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTT 364317 |||||| | ||||| ||| || || ||| | || || || || ||||| | ||| Sbjct 8579 TACACCTCCAAGGACGAAGTTGCTGTTTGCAACTTAGCCTCTATTGCTCTTCCTTCATTT 8638 Query 364318 GT 364319 || Sbjct 8639 GT 8640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303224197759718