Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7711 138 1e-27 seq6735 138 1e-27 seq1303 138 1e-27 seq5539 100 2e-16 seq2634 95.1 1e-14 >seq7711 Length=15848 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||| || ||| | |||||| |||| ||||| || | Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| ||||||| | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 10805 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 10746 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || |||||| | ||||||| | | | || ||| || ||| Sbjct 10745 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 10686 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || ||||| |||||||| | || || || ||||| Sbjct 10685 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 10650 >seq6735 Length=1584 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||| || ||| | |||||| |||| ||||| || | Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| ||||||| | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 1152 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1093 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || |||||| | ||||||| | | | || ||| || ||| Sbjct 1092 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 1033 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || ||||| |||||||| | || || || ||||| Sbjct 1032 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 997 >seq1303 Length=22699 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||| || ||| | |||||| |||| ||||| || | Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| ||||||| | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 4479 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 4538 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || |||||| | ||||||| | | | || ||| || ||| Sbjct 4539 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 4598 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || ||||| |||||||| | || || || ||||| Sbjct 4599 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 4634 >seq5539 Length=6842 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| || | || || ||| | || || | ||||| || | Sbjct 1194 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTC 1135 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || ||| | || |||||||| || || || ||||| || ||||| ||||| Sbjct 1134 TGATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1075 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||||| || ||| || ||||| ||||||| | | | | | |||||| || Sbjct 1074 GCAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAA 1015 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||||| |||| || || Sbjct 1014 CATTCAAAAAGAATCTACTCTTCACTTGGT 985 >seq2634 Length=12318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/281 (68%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 131867 GTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTCAAG 131926 ||||||| || | || || ||||| || ||||| | || |||||||| ||||||||| Sbjct 9657 GTGAATTTGATAGCATCGGCGGCAGGTTTGGTTCTGAGGTAGTACATGCCTGTCTTCAAG 9598 Query 131927 CCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCCACA 131986 ||||||| ||| |||| ||| ||||| | | ||| ||| | || ||| ||| Sbjct 9597 CCTTTCTTCCAGCCATAAAAGTGCATGGAAGTGAGTTTTTGGTAATTTGGGTTGTCCATG 9538 Query 131987 AACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTCAAC 132046 | |||||| || || || ||||| ||||||| ||| | ||| || | | | |||| Sbjct 9537 TGAATATTGAGGGACTGGCTTTGATCAATGTAAGCTCCACGGTCGGCAGATA-AATCAAT 9479 Query 132047 AAT-ACTTTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGGAAT 132105 || | || || |||||||| || | || ||| ||||| || | ||| | ||| || Sbjct 9478 GATGGCCTTTTGTTTAATTTCATAAACAGTTTTGTAGAGCTGTTTCAAGTCATCTGGGAT 9419 Query 132106 GTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTT 132146 | | | ||| | |||||| |||| | ||| |||| Sbjct 9418 TTGGGGCAGAGCCTGGATAGATCCATTGTGTGCGATTATTT 9378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429895396441095