Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5539 109 5e-19 seq7711 104 2e-17 seq6735 104 2e-17 seq1303 104 2e-17 >seq5539 Length=6842 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||| || || || || || |||||||| || | ||| || || Sbjct 1194 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTC 1135 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || ||||||||||| ||||| ||||| | || ||||| Sbjct 1134 TGATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1075 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | | |||| || || |||||| ||||||||| | ||| || ||||||| || Sbjct 1074 GCAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAA 1015 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||||||| |||||| | || |||| Sbjct 1014 CATTCAAAAAGAATCTACTCTTCACTTGGT 985 >seq7711 Length=15848 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || ||||| |||||| |||| || ||| | Sbjct 10865 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 10806 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| | | | | | || |||||||| || ||||| ||||| | || |||||| Sbjct 10805 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 10746 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||||| || || || ||||| ||||||| ||| | |||| || ||| Sbjct 10745 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 10686 Query 115466 ATTCAAAAAGAGTCTAC 115482 || ||||| || ||||| Sbjct 10685 ATCCAAAAGGAATCTAC 10669 >seq6735 Length=1584 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || ||||| |||||| |||| || ||| | Sbjct 1212 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 1153 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| | | | | | || |||||||| || ||||| ||||| | || |||||| Sbjct 1152 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 1093 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||||| || || || ||||| ||||||| ||| | |||| || ||| Sbjct 1092 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 1033 Query 115466 ATTCAAAAAGAGTCTAC 115482 || ||||| || ||||| Sbjct 1032 ATCCAAAAGGAATCTAC 1016 >seq1303 Length=22699 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || ||||| |||||| |||| || ||| | Sbjct 4419 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 4478 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| | | | | | || |||||||| || ||||| ||||| | || |||||| Sbjct 4479 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 4538 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||||| || || || ||||| ||||||| ||| | |||| || ||| Sbjct 4539 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGTCGCACCCTCTCCGACTACAAC 4598 Query 115466 ATTCAAAAAGAGTCTAC 115482 || ||||| || ||||| Sbjct 4599 ATCCAAAAGGAATCTAC 4615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425303830113880