Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq923 131 2e-25 seq5539 122 8e-23 seq7711 111 1e-19 seq6735 111 1e-19 seq1303 111 1e-19 >seq923 Length=21762 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | || || || ||||| |||||||| || || ||||| Sbjct 10599 ACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGGCC 10658 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || ||||| || |||||| | || | ||| |||||||| || ||||||||||| || Sbjct 10659 GTCTTCGAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTT 10718 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| |||||||||||||| | || | || || | || |||| || | ||| | Sbjct 10719 GTCTTGGATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACTTCAAGGGTGAT 10778 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || ||||| ||||||||||| |||||||| |||||| Sbjct 10779 AGTCTTACCTGTTAGAGTTTTGACGAAAATTTGCATG 10815 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || || || | || || || ||||| |||||||| || Sbjct 10360 CCACCTCTGAGACGTAGAACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 10419 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||| || |||||| | || | ||| |||||||| || ||| Sbjct 10420 AAAGTGCGGCCGTCTTCAAGCTGTTTACCTGCGAAAATGAGACGTTGCTGGTCTGGTGGG 10479 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||||||||||||| | || | || || | || |||| Sbjct 10480 ATTCCTTCCTTGTCTTGAATTTTCTGCTTGACGTTGTCAATTGTGTCTGAAGATTCGACT 10539 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || ||||| || || || ||||||||||| ||||| Sbjct 10540 TCAAGGGTGATAGTCTTACCTGTAAGGGTCTTTACGAAAATTTGCAT 10586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACA 131169 || |||||||| || ||||||||||| ||||| |||||||||||||| | || | Sbjct 10234 CGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCAATT 10293 Query 131170 GTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATC 131229 || || | || |||| || | ||| | ||| ||||| || |||||||| |||||||| Sbjct 10294 GTGTCCGAAGATTCGACTTCAAGGGTGATGGTCTTACCTGTCAGAGTTTTGACGAAAATT 10353 Query 131230 TGCAT 131234 ||||| Sbjct 10354 TGCAT 10358 >seq5539 Length=6842 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || |||||||||||||||||| | Sbjct 967 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 1026 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || ||||| || || || ||| | || || || ||||| || ||||| Sbjct 1027 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAAATCAAGCGTTGCTGATCTGGAGGA 1086 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || |||||| || || | | ||| | || ||| | || || | Sbjct 1087 ATTCCTTCCTTATCTTGGATTTTTTGTTTAACATTCTCAATAGAATCAGAAGATTCTACT 1146 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||| || ||||| ||||| ||||||||||| Sbjct 1147 TCAAGAGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 1193 >seq7711 Length=15848 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || |||||||| |||||||| ||| | |||||| || Sbjct 10654 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 10713 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||| |||||| | || | | ||||| || ||||| |||||||| || || Sbjct 10714 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 10773 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || || |||| | || | | |||| ||| |||| |||| ||||| ||| Sbjct 10774 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 10833 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||||||||| ||||| || || |||||||||| Sbjct 10834 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGA 10867 >seq6735 Length=1584 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || |||||||| |||||||| ||| | |||||| || Sbjct 1001 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 1060 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||| |||||| | || | | ||||| || ||||| |||||||| || || Sbjct 1061 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 1120 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || || |||| | || | | |||| ||| |||| |||| ||||| ||| Sbjct 1121 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 1180 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||||||||| ||||| || || |||||||||| Sbjct 1181 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGA 1214 >seq1303 Length=22699 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || |||||||| |||||||| ||| | |||||| || Sbjct 4630 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 4571 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||| |||||| | || | | ||||| || ||||| |||||||| || || Sbjct 4570 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 4511 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || || |||| | || | | |||| ||| |||| |||| ||||| ||| Sbjct 4510 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 4451 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||||||||| ||||| || || |||||||||| Sbjct 4450 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGA 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471967079660160