Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5042 248 1e-60 seq2634 188 9e-43 seq7572 82.4 1e-10 >seq5042 Length=7215 Score = 248 bits (274), Expect = 1e-60 Identities = 603/906 (67%), Gaps = 12/906 (1%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| || |||||||| || | || || ||||| || ||||||||||| |||| Sbjct 5372 CATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTTG 5431 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | || || | ||||||||||||||||| || || || | |||| ||| | || || Sbjct 5432 CATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTGCTGAAACC 5491 Query 32477 CA-ATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 | | || || | || | || || |||||||| ||||| ||| | || | || Sbjct 5492 TAGAGACAAAAGTAAA-CGGTCAGCAACAAATTCGATATACTGGGACATTAATTTGCTAT 5550 Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595 |||||||||| || || || || | |||| | ||||||||||| || | || | Sbjct 5551 TCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTAACGG 5610 Query 32596 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 32655 | || | | || | | || | |||||||| || | | | | ||| |||| Sbjct 5611 CCTCAGCAACGATGGCTAATATTTTTTCTTCAGAGGGCTTGTTGATGAGGTATTTGAACA 5670 Query 32656 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 | || | |||||| ||| ||||| |||||||||| || | ||||||||| || | Sbjct 5671 ATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGGAGAAAG 5730 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 | || |||||||| |||||||||||||| ||||| || |||| ||||| || ||| | Sbjct 5731 TAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGCCACTGA 5790 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GT 32832 |||| || ||||| || | ||| ||| ||||| || ||| | | | | || Sbjct 5791 AGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGTTAGAGT 5850 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| ||||||| ||||||| | ||||| || || | || || || | | | | Sbjct 5851 CATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGATGTTTTGAACGG 5910 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || | || ||| | ||||| ||||||| | || |||||||| | | | Sbjct 5911 CGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAGCATGGAGT 5970 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 ||||||| || ||||||||||| ||||| || || || || || | || || | Sbjct 5971 ACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAG 6030 Query 33013 TAATCTGTACTTCTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACT 33070 || || ||||| || | ||| ||| | | | ||||| || || || || || || Sbjct 6031 GGATTTGGACTTCAGTTCCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCT 6088 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA-- 33128 ||| || || || || | | | || ||||||||| |||||| ||||| ||| Sbjct 6089 GGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATT 6148 Query 33129 TTCCAATCATTGA-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 |||| | |||| | || | || | ||| |||||||| || ||||| || || || Sbjct 6149 TTCCCAGTGTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTC 6208 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 || ||||| ||||| | ||| || || || ||| ||||| || | || |||||||| Sbjct 6209 AGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATT 6268 Query 33248 TGGATT 33253 ||| || Sbjct 6269 TGGGTT 6274 >seq2634 Length=12318 Score = 188 bits (208), Expect = 9e-43 Identities = 573/876 (65%), Gaps = 11/876 (1%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || ||||||||||| || | || || ||||| | |||||||| ||| || | Sbjct 8571 ATTTCAGTGCAAAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTGCCG 8512 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| || || || || || ||| ||||||| |||||||| || || || |||| ||| Sbjct 8511 TTACAAGCGTCTTTGTAGAGCATGTATGGAGTTCCAGTTTCGATTTGGGAATCTAAAATA 8452 Query 62921 GCTTTCCAGACGACTCGAGCCTTTATTA--TAGATTTGTATCTCTTTTCTCTTT-CGTAT 62977 || | ||||| | || | || | | | | ||| | ||| ||||| Sbjct 8451 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTAT 8392 Query 62978 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCC 63037 | || | | ||||||| || |||||||| | | || ||||| ||||| Sbjct 8391 TTTAGGTAGAGTTCATCGAACTTCTCGCCCCAAACGTCAGCTAGACCAGGGGCTTCATGG 8332 Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 || || | || ||||| || |||| ||| || || ||| || || ||||||||| Sbjct 8331 GGGCAGAATAATGACCAGTCACCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATC 8272 Query 63098 CAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63156 |||||| | || || || || | || | || ||| || || || ||| ||| | || Sbjct 8271 CAAAGACCGTAGAACAAG-TCACGGGCACGATTTTCTTCTTTACCGTGATTTTTTCTTAG 8213 Query 63157 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 | | || | | ||| || | |||||| ||||| | ||| ||||| | | || || Sbjct 8212 GTTTAAAAATTCAAAAATGTCGGCATGCCATGGTTCAAGGTAAATGGCGAAGGCGCCTGG 8153 Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 |||||||| || || || || | |||||||||||| | || | ||| | |||||| Sbjct 8152 ACGTTTGTTGCCGCCTTGGTCGACGTATCTAGCGGTAGTGTTGAATACTTGGAGCATTGG 8093 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 || ||| || || || ||||||||||| || | ||| || ||| | ||||||||||| Sbjct 8092 AACAATTCCGTTCGAAGTACCATTGGTTCCGGCGATGTAAGAGCCAGTTGCACGAATATT 8033 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || |||||| ||||| || || |||||||||| |||||| | | || Sbjct 8032 GTGGATACTTAGACCAATTCCACCAGCAGATTTAGAGATTTTAGCGCATTGGGAGATAGT 7973 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 |||||| || || || || |||||| ||| | || | || ||| | | || Sbjct 7972 ATCATAAATACCTTCGATGGAGTCATCCTGCATTGTTAGCAAGAAGCAGGAACTTAGCTG 7913 Query 63457 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA 63516 ||||| ||||||| | || || | |||||||| || |||||||| | | || Sbjct 7912 AGGACGATTAGTTCCAGAGTTGAAAAGTGTAGGAGAGGCATGAGTAAAAAAGCGCTGTGA 7853 Query 63517 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGC- 63573 | || | ||| || ||||| || | |||| ||| | ||| || || | ||| Sbjct 7852 CATGAGGTGGTATGTAGTGATAGCGGATTGGATAT--CATCGCCATGGATACC-AATGCT 7796 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 ||| ||||| | | || || |||||||||| || || || | ||||| | ||| Sbjct 7795 GACGCGCATGAGAAGGTATTGTGGTCTTTCAATAATTTTACCGTCAACTTTCAGGAGGTA 7736 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 || |||| | ||||| || ||||| ||||| || Sbjct 7735 AGACCTTTCGAGGGTTTTGAAGCCAAAGTAGTTATA 7700 >seq7572 Length=6253 Score = 82.4 bits (90), Expect = 1e-10 Identities = 194/289 (67%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 |||||||| ||||| || || || || || | || || | || || ||||| || Sbjct 1 TTTTCAATCATAATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTT 60 Query 33030 CAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | ||| ||| | | | ||||| || || || || || ||||| || || || || | Sbjct 61 CCAAA--GTTGGCGACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGA 118 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT--CCAATCATTGA-TAT 33144 | | || ||||||||| |||||| ||||| ||||| || | |||| | | Sbjct 119 GGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTGT 178 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | || | ||| |||||||| || ||||| || || || || ||||| ||||| | Sbjct 179 CGTGTGACAGATCGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTT 238 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||| || || || ||| ||||| || | || ||||||||||| || Sbjct 239 GCCATATTTCGTGCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633570624820400