Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5539 145 7e-30 seq923 125 6e-24 >seq5539 Length=6842 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||||||| | || |||||| |||| || | ||||| || || || Sbjct 1194 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACTCTTGAAGTAGAATCTTC 1135 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| ||| | || ||||||||| || || ||||| ||||| || || || Sbjct 1134 TGATTCTATTGAGAATGTTAAACAAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1075 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| ||||| |||||| ||||||||| || || || ||||||||| Sbjct 1074 GCAACGCTTGATTTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGTCCGATTACAA 1015 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || || || || || || Sbjct 1014 CATTCAAAAAGAATCTACTCTTCACTTGGTTCT 982 >seq923 Length=21762 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || ||||| | ||||| | ||||| || || || Sbjct 10814 ATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10755 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 10754 GACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 10695 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || ||||| | ||||| | |||||| || || ||||| Sbjct 10694 CAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTACAAC 10635 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || || || ||| | || ||||| || Sbjct 10634 ATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGCGG 10588 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || ||||| | ||||| | ||||| || || || Sbjct 10586 ATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCA 10527 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 10526 GACACAATTGACAACGTCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 10467 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || ||||| | ||||| | |||||| | || ||||| Sbjct 10466 CAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAAC 10407 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || || || ||| | || ||||| || Sbjct 10406 ATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGTGG 10360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433287076097435