Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970865.1_202017-01-25] 7,749 sequences; 71,049,901 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5042 259 5e-64 seq7572 132 5e-26 >seq5042 Length=7215 Score = 259 bits (286), Expect = 5e-64 Identities = 630/937 (67%), Gaps = 23/937 (2%) Strand=Plus/Plus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||||||||| |||||||| || | ||| |||||||||||||| || || |||| Sbjct 5371 TCATAACACCGGCCTTTTGGTAGTCGCTAACGCGCTTTTCAAAGAAATTAGTTTTGCCTT 5430 Query 92849 CCAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTTCACCGA 92906 || ||| ||| || || | || ||| || || ||| ||||| || | || Sbjct 5431 GCATAGAGATCATATCCATGAAATCGAATGGGTTAGTGACGTGATAATGTTTG---CTGA 5487 Query 92907 TCAACTCGT-ACAA---TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 | || | |||| ||| | ||||| |||||||| || ||||| ||||| || | Sbjct 5488 A-ACCTAGAGACAAAAGTAAACGGTCAGCAACAAATTCGATATACTGGGACATTAATTTG 5546 Query 92963 CAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 | ||||||||||| || |||||||| | ||| || ||||| |||| ||||| | Sbjct 5547 CTATTCATTCCTATTAGGGAGACAGGTAGTGAGTCAGTTAAGAATTCTTGTTCGATGGTA 5606 Query 93023 ACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGG--TTTTTGTACGACATAAT 93080 ||||| || | ||| ||| || | | | || | || || ||| | || || | Sbjct 5607 ACGGCCTCAGCAACGATGGCTAATA-TTTTTTCTTCAGAGGGCTTGTTG-ATGAGGTATT 5664 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || ||| || ||| |||| ||||| || | ||||||||||| | || | || ||| Sbjct 5665 TGAACAATAGGCAGCCAAAATCGGTGTGAAGACCTTCGTCTCTACAGATAAGTTCGTTGG 5724 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||| || | ||| || | || || || || |||||||| || || | |||||| | Sbjct 5725 AGAAAGTAAGACCGGGCATGAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCAAAAGAGC 5784 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 || || || || ||||| ||| | ||| || | | | |||| |||| || | Sbjct 5785 CACTGAAGAAGATGCCTTCAACGACACAAAAAGCAGCCAGTCTTTCGCCAAAGCTTTTGT 5844 Query 93261 AATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 | | | | ||||| | | |||||| | || ||||||||||| || || | |||| Sbjct 5845 TA-GAGTCATCAATCCACTCAAGAGCCCAGTTAGCCTTTTTCTTAATGCAGGGGA-TGTT 5902 Query 93320 TCG-ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 | | | ||||| | |||| | |||| || | |||| ||||| ||||| || | Sbjct 5903 TTGAACGGCGTTGAGTAGGAAGTCTCTTTCAACGTTATCTTTGATGTAAGTATCAATAAG 5962 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || || ||||||||| |||| || || || ||||||||| || || ||||| | Sbjct 5963 CATGGAGTACATTTCACTGTGGATGTTTTCAATCATAATTTGGAAACCATAAAAACAGCG 6022 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||||| | ||| || ||||| ||| | | ||||| ||||| ||||| ||||| Sbjct 6023 GGCTTCAGGGATTTGGACTTCAGTTCCAAAGTTGGCGACGAGGTTTTCGTTGACGATACC 6082 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 |||| || || || || || | || | ||| ||||||| | | || | ||| | || Sbjct 6083 ATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGATAAAATATCTTTCGTTATCAGTTAG 6142 Query 93559 CTTA---TCCCAATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 |||| ||||| | | || || | ||| |||||||||||||| || ||||| || Sbjct 6143 CTTATTTTCCCAGT-GTTGAGTGTCGTGTGACAGATCGACTTCTTCAACGGTCCAGAAAC 6201 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 ||||| |||||||||||||| | |||||| || || ||| ||||| || | ||| | Sbjct 6202 TGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGGACGA 6261 Query 93675 AACGATTAGGGTTATCTTTTAGTAACGGCTCTAGTTG 93711 | | ||| ||||| ||| |||| ||||| || || Sbjct 6262 ATCTATTTGGGTTGGGTTTAAGTAGAGGCTCGAGCTG 6298 >seq7572 Length=6253 Score = 132 bits (146), Expect = 5e-26 Identities = 212/301 (70%), Gaps = 5/301 (2%) Strand=Plus/Plus Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || || ||||| | ||||| | ||| || ||||| ||| | | Sbjct 12 AATTTGGAAACCATAAAAACAGCGGGCTTCAGGGATTTGGACTTCAGTTCCAAAGTTGGC 71 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||||| ||||| ||||| ||||||||| || || || || || | || | ||| || Sbjct 72 GACGAGGTTTTCGTTGACGATACCATCGCTGGCAGCGAAGAAGGCGAGGATGTTCTTGAT 131 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTAT---CCCAATCG-GATAGATCTTTTGAAAGAT 93590 ||||| | | || | ||| | ||||||| |||| | || | || | ||| |||| Sbjct 132 AAAATATCTTTCGTTATCAGTTAGCTTATTTTCCCAGTGTTGAGTG-TCGTGTGACAGAT 190 Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTT 93650 |||||||||| || ||||| || ||||| |||||||||||||| | |||||| || | Sbjct 191 CGACTTCTTCAACGGTCCAGAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGT 250 Query 93651 GATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGTT 93710 | ||| ||||| || | ||| || | ||| ||||| ||| |||| ||||| || | Sbjct 251 GCCATTTTATTGGGAAGAGGACGAATCTATTTGGGTTGGGTTTAAGTAGAGGCTCGAGCT 310 Query 93711 G 93711 | Sbjct 311 G 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556806861070760